View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_19 (Length: 429)
Name: NF7711_low_19
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 40478289 - 40477869
Alignment:
| Q |
1 |
caaattttactataaaacatcattaaaatgtttgaatttatatgcatattcattttcattatttgaattagaagttacaagtctttcctgaaaataaaat |
100 |
Q |
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| T |
40478289 |
caaattttactataaaacatcattaaaatgtttgaatttatatgcatattcattttcattatttgaattagaagttacaagtctttcctgaaaataaaat |
40478190 |
T |
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| Q |
101 |
tatcaaatgctcaagagaattatgtttattcctcatccacaggatacaaaacatacctggtgaaaatcttctgcttcaatagtttctcaagttcggtcaa |
200 |
Q |
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| T |
40478189 |
tatcaaatgctcaagagaattatgtttattcctcatccacaggatacaaaacatacctggtgaaaatcttctgcttcaatagtttctcaagttcggtcaa |
40478090 |
T |
|
| Q |
201 |
tccaccttgatccgagtcagaacaattaatttgaacattactttcaccaactgctctttgttgattgccagaagattcttttgcaacctgtttttcatat |
300 |
Q |
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| T |
40478089 |
tccaccttgatccgagtcagaacaattaacttgaacattactttcaccaactgctctttgttgattgccagaagattcttttgcaacctgtttttcatat |
40477990 |
T |
|
| Q |
301 |
aggaaatgaaaaaacagtgagatatcaataataa--------cacagtttcaccaatcaataggtaacattgcagttccaatactcaatatataatatag |
392 |
Q |
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| T |
40477989 |
aggaaatgaaaaaacagtgagatatcaataataacacaataacacagtttcaccaatcaataggtaacattgcagttccaatactcaatatataatat-- |
40477892 |
T |
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| Q |
393 |
caaccaatagaaataaagattgat |
416 |
Q |
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| T |
40477891 |
-aaccaatagaaataaagattgat |
40477869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 40478318 - 40478290
Alignment:
| Q |
4 |
attttactataaaacatcattaaaatgtt |
32 |
Q |
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| T |
40478318 |
attttactataaaacatcattaaaatgtt |
40478290 |
T |
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