View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7711_low_20 (Length: 428)
Name: NF7711_low_20
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 136 - 409
Target Start/End: Original strand, 8953786 - 8954059
Alignment:
| Q |
136 |
ctatgtccccgatgtaataagcataatgagtcattcctttattataatatagactgttcagcttctagaaatctttggcatgctcttggtttatccaatg |
235 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8953786 |
ctatgtccccgatgtaataaacataatgagtcattcatttattgtaatatagactatttagcttctagaaatctttggcatgctcttggtttatccaatg |
8953885 |
T |
|
| Q |
236 |
ttgacttcctttccgacttagacataatcagttggctcaaagagggtctatcttcgatcaactccaacacttttgccgcaactatatggtggacttggct |
335 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8953886 |
ttgacttcctttccgacttagacgtaatctgttggctcaaagagggtctatcttcgatcaactccaacacttttgccgcaactatatggtggacttggct |
8953985 |
T |
|
| Q |
336 |
taatcacaattatttttgcttttccaactcatctatccttctatattgtttcactatgtaaactcgtgatatga |
409 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||| |
|
|
| T |
8953986 |
taatcacaattatttttgctcttccaactcatctatcattctatattgtttcactatgtaagcccgtgatatga |
8954059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 8951589 - 8951705
Alignment:
| Q |
20 |
ctttaatatgacgcctccatctttcaaaaaagatcaagttccttatttgggtttcttgcaataattttgtccccaccatgttattgtttcaccgccgcaa |
119 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8951589 |
ctttaatatgaagcctccatcttccaaaaaagatcaagttccttatttgattttcttgcaataattttgtccccaccatgttattgtttcgccgc----- |
8951683 |
T |
|
| Q |
120 |
cttggctcttaatggtctatgt |
141 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8951684 |
cttggctcttaatggtctatgt |
8951705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 9367210 - 9367145
Alignment:
| Q |
291 |
gatcaactccaacacttttgccgcaactatatggtggacttggcttaatcacaattatttttgctt |
356 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| |||||| |||| | ||||||||||||||||||||| |
|
|
| T |
9367210 |
gatcaagtccaacacttttgtcgcaagtatttggtggtcttgacataatcacaattatttttgctt |
9367145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University