View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_21 (Length: 421)
Name: NF7711_low_21
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 407
Target Start/End: Complemental strand, 30128472 - 30128086
Alignment:
| Q |
21 |
cagcaaaacaaccaccagaaacagaacctgagaaacaaggcctcagacaatcttgctcgatcgaatgactaagaaaaaccagaacagaatctggagcaaa |
120 |
Q |
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| T |
30128472 |
cagcaaaacaaccaccagaaacagaacctgagaaacaaggcctcagacaatcttgctcggtcgaatgactaagaaaaaccagaacagaatctggagcaaa |
30128373 |
T |
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| Q |
121 |
caacagaagaagcgcagacatttgagggataatggggcacacactacctcaagagacaatattcgggatcccagcacaaaattttcatcactatatactt |
220 |
Q |
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| T |
30128372 |
caacagaagaagcgcagacatttgagggataatggggcacacactacctcaagagacaatattcgggatcccagcacaaaattttcatcactatatactt |
30128273 |
T |
|
| Q |
221 |
tattttgtgttcttttcactcaaaaaatctaactttccttcacccctgttctctattttttgcaatattgataatttgaaacaaggtatcctctaaagta |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30128272 |
tattttgtgttcttttcactcaaaaaatctaactttccttcacccatgttctctattttttgcaatattgataatttgaaacaaggtatcctctctagta |
30128173 |
T |
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| Q |
321 |
tggatacgcaacctcccttgccaaatggccccagcattccattaaacatgtatccttaaagtcggagtggccactcagcatatggtg |
407 |
Q |
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| T |
30128172 |
tggatacgcaacctcccttgccaaatggccccatcattccattaaacatgtatccttaaagtcggagtggccactcagcttatggtg |
30128086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 36288659 - 36288612
Alignment:
| Q |
232 |
cttttcactcaaaaaatctaactttccttcacccctgttctctatttt |
279 |
Q |
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| T |
36288659 |
cttttcactctaaaattcaaactttccttcaccccttttctctatttt |
36288612 |
T |
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