View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_22 (Length: 417)
Name: NF7711_low_22
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 33397238 - 33397631
Alignment:
| Q |
13 |
agaaatatccttacggcatgtaagtgagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaac |
112 |
Q |
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| T |
33397238 |
agaaatatccttacggcatgtaagtgagaaagaattcaaagttggtctctgacatattgcagaagcaagaccatcatgtgatagcaaatggcattggaac |
33397337 |
T |
|
| Q |
113 |
ataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttg |
212 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33397338 |
ataaccaactcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttg |
33397437 |
T |
|
| Q |
213 |
aaagcttttgagtgagaagcttcagagcattattataattgtcgctgtcattggtgattattttagggtaactgatatccaattgttggaggaaagggaa |
312 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33397438 |
aaagcttttgagtgagaagcttcaaagcattattataattgtcactgtcattggtgattattttagggtaactgatatccaattgttggaggaaagggaa |
33397537 |
T |
|
| Q |
313 |
ggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggttaaggttgatttagtgtttttgagaata |
406 |
Q |
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| T |
33397538 |
ggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggtcaaggttgatttagtgtttttgagaata |
33397631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 164 - 387
Target Start/End: Original strand, 36876466 - 36876698
Alignment:
| Q |
164 |
gagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgctgtc-- |
261 |
Q |
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| T |
36876466 |
gagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcctttgagtaagaagctttagagcattattataagtgtcagtgtcgt |
36876565 |
T |
|
| Q |
262 |
----att---ggtgattattttagggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagcc |
354 |
Q |
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||| ||| ||| |||| ||| |||||||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |
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| T |
36876566 |
agccattaccggttattgttttggggaaactgatatccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagcc |
36876665 |
T |
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| Q |
355 |
gatgttggaacaagtgagagaggttaaggttga |
387 |
Q |
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| T |
36876666 |
aatgttggaacatgtgagagaggtcaaggttga |
36876698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 393
Target Start/End: Complemental strand, 27005101 - 27004746
Alignment:
| Q |
38 |
gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac |
137 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||| ||||||| ||| ||| || ||||| | |||||||| || | |||||||||| || |
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| T |
27005101 |
gagaaagaattcaaagtgggtctctggtagattgcagaagcaataccatcatgtgttaggaattggcaatcgaacataaaaacttgttgtagaaacttac |
27005002 |
T |
|
| Q |
138 |
agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcag |
237 |
Q |
| |
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|||| | ||| | | ||||||| |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |
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| T |
27005001 |
agttgacacatagttgaaaaaacaaagagtcattaaagtaggaatgaccagagagattaacattgcggagttttgaaagcttttgagtaagaagctgtag |
27004902 |
T |
|
| Q |
238 |
agcattattataattgtcgctgtcattggtgattattttagggtaactgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtca |
337 |
Q |
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| T |
27004901 |
agcattgtaataagcatgagcattaccagatattgttttagggaaactgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgtga |
27004802 |
T |
|
| Q |
338 |
gtatggtatagagagccgatgttggaacaagtgagagaggttaaggttgatttagt |
393 |
Q |
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|| ||| ||||||| | || |||||||| ||||||||||| ||||| |||||||| |
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| T |
27004801 |
gtgtggcatagagaagccatattggaacatgtgagagaggtcaaggtggatttagt |
27004746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 33093125 - 33093071
Alignment:
| Q |
170 |
ttaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgag |
224 |
Q |
| |
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||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||| |
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| T |
33093125 |
ttaacatagaaattacctgagagattaaccttgcggagttttaaaagcttttgag |
33093071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 36810353 - 36810180
Alignment:
| Q |
38 |
gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac |
137 |
Q |
| |
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|||| |||||||||||| |||||||| | ||||||| ||||| |||| |||||| ||| ||| |||| | ||||||||||||||||| || || | ||| |
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| T |
36810353 |
gagagagaattcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcac |
36810254 |
T |
|
| Q |
138 |
agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagtttt |
211 |
Q |
| |
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||||| | |||| | ||||| || |||| || ||||||| ||||||||| ||||||||| |||||||| |
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| T |
36810253 |
agttcctgcacagttccaaaaacaatgaatcatcaatatagaaattaccagagaggttaaccttgtggagtttt |
36810180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 37580008 - 37579955
Alignment:
| Q |
190 |
gagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcatt |
243 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| |
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| T |
37580008 |
gagattaaccttgcagagttttgaaagcttttgagtaagaacctttagagcatt |
37579955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 33708281 - 33708173
Alignment:
| Q |
109 |
gaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagt |
208 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| | ||||||| |||||||| |||||| ||| ||| |||||||||||||| |||||| |
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| T |
33708281 |
gaacataagcacctcttggagaaacttgcagttcatacatagctgaaaaaacaatgagtcatttacgtaggaattaccggagagattaaccttacggagt |
33708182 |
T |
|
| Q |
209 |
tttgaaagc |
217 |
Q |
| |
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||||||||| |
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| T |
33708181 |
tttgaaagc |
33708173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 33714188 - 33714039
Alignment:
| Q |
68 |
attgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagt |
167 |
Q |
| |
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||||||||||||| |||| || ||| || || |||||| | ||||||||||||||| |||||| ||||||||||| | ||||||| |||| |
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| T |
33714188 |
attgcagaagcaataccagcatgtgttatggaacggcatttgtacataaccacctctttgagaaacttgcagttcatacatagctgaaaaaacaacgagt |
33714089 |
T |
|
| Q |
168 |
cattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagc |
217 |
Q |
| |
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|||| || ||| ||| |||||||||||||||||| ||||||| ||||||| |
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|
| T |
33714088 |
catttacataggaattaccagagagattaaccttacggagttctgaaagc |
33714039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 18723643 - 18723550
Alignment:
| Q |
137 |
cagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaa |
230 |
Q |
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||||||||||||| | ||||||| || ||||||| ||||| || |||||| |||||||| |||||||||||||||||| ||||||| |||| |
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| T |
18723643 |
cagttcatacacagttgaaaaaacaatgaatcattaatgtagatattaccagaaagattaactttgcggagttttgaaagcctttgagtaagaa |
18723550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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