View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_23 (Length: 408)
Name: NF7711_low_23
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 1587577 - 1587735
Alignment:
| Q |
20 |
tggagcatgggaactaacaagtattacagtcttctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctgga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587577 |
tggagcatgggaactaacaagtattacagtcttctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctgga |
1587676 |
T |
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| Q |
120 |
cttttagggtcaatgacaagttgcactttgtacttgacaataatcaggtgatgttataa |
178 |
Q |
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| T |
1587677 |
cttttagggtcaatgacaagttgcactttgtacttgacaataaccaggtgatgttataa |
1587735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 1588267 - 1588362
Alignment:
| Q |
202 |
agttagcattgcaaaatgttttatagtatgttgcttttaaaaatttggctatgacaccttaagtgactagattattctccttgatcatgttggtcc |
297 |
Q |
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| T |
1588267 |
agttagcattgcaaaatgttttatagtatgttgcttttaaaaatttgactctgacaccttaagggactagattattctccttgatcatgttggtcc |
1588362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 324 - 391
Target Start/End: Original strand, 1588389 - 1588456
Alignment:
| Q |
324 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgcttatgatgattttgat |
391 |
Q |
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| T |
1588389 |
aaattgcttgaagataagctttaattgctttatggggtctgaattctactgcttatgatgattttgat |
1588456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 1581118 - 1581243
Alignment:
| Q |
43 |
ttacagtcttctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttg |
142 |
Q |
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| T |
1581118 |
ttacagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttg |
1581217 |
T |
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| Q |
143 |
cactttgtacttgacaataatcaggt |
168 |
Q |
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|||||| |||| ||||| ||| |||| |
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| T |
1581218 |
cactttctactcgacaaaaattaggt |
1581243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 1603697 - 1603572
Alignment:
| Q |
43 |
ttacagtcttctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttg |
142 |
Q |
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|||||||||| ||| | ||||||| |||| |||| ||||||||||| ||| ||| ||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
1603697 |
ttacagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttg |
1603598 |
T |
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| Q |
143 |
cactttgtacttgacaataatcaggt |
168 |
Q |
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|||||| |||| ||||| ||| |||| |
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| T |
1603597 |
cactttctactcgacaaaaattaggt |
1603572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 19270208 - 19270050
Alignment:
| Q |
20 |
tggagcatgggaactaacaagtattacagtcttctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctgga |
119 |
Q |
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||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
19270208 |
tggagcatgggcattaacaagtattacagtcttgtacatggttggaaaactgttgtgagcaaaaatagttttgaaaagggtaaaaaacttaacatctgga |
19270109 |
T |
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| Q |
120 |
cttttagggtcaatgacaagttgcactttgtacttgacaataatcaggtgatgttataa |
178 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19270108 |
cttttagggtcaatgacaagttgcactttgtactcgacaataatcaggtgatgttataa |
19270050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 19268331 - 19268279
Alignment:
| Q |
245 |
tttggctatgacaccttaagtgactagattattctccttgatcatgttggtcc |
297 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
19268331 |
tttgactatgacaccttaaatgactagattattctccttgatcatgttggtcc |
19268279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 19268252 - 19268198
Alignment:
| Q |
324 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgctta |
378 |
Q |
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| T |
19268252 |
aaattgcttgaaaataagctttgattgctttatagggtttgaattctactgctta |
19268198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 39615029 - 39614941
Alignment:
| Q |
211 |
tgcaaaatgttttatagtatgttgcttttaaaaatttggctatgacaccttaagtga--ctagattattctccttgatcatgttggtcc |
297 |
Q |
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|||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||| ||| |||||| ||||||||||||||||||| |
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| T |
39615029 |
tgcaaaatgttttatattatgttgcttttaacaatttgactatgacaccttaggtgactctacattattttccttgatcatgttggtcc |
39614941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 8152870 - 8152926
Alignment:
| Q |
337 |
ataagctttaattgctttatggggtttgaattctactgcttatgatgattttgatgt |
393 |
Q |
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||||||||| ||| |||||||| | || |||| |||||||||||||||||||||||| |
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| T |
8152870 |
ataagctttgattactttatggaggtttaattatactgcttatgatgattttgatgt |
8152926 |
T |
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