View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_24 (Length: 400)
Name: NF7711_low_24
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 8448966 - 8448581
Alignment:
| Q |
1 |
gtgaaaattaattagatttgaggcatttaaaatgcaggatttgaggcctgaaattccaagggatactcatccaaagttagtcgagttacttcaccgctgt |
100 |
Q |
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| T |
8448966 |
gtgaaaattaattagatttgaggcatttaaaatgcaggatttgaggcctgaaattccaagggatactcatccaaagttagtcgagttacttcaccgctgt |
8448867 |
T |
|
| Q |
101 |
tggcacaaagatccctccttaaggcccgacttcgcagaaattattaagtttctacatcacattaacaacatggtatggggaggaatatagctagatagac |
200 |
Q |
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| T |
8448866 |
tggcacaaagatccctccttaaggcccgacttctcagaaattattaagtttctacatcacattaacaacatggtatggggaggaatatagctagatagac |
8448767 |
T |
|
| Q |
201 |
ttcttgttaccgttgccnnnnnnnaacttctaaaatgctttgttttcccccttatgtacttgtacagattgcagggaagaaaaagaaggtgaaggttaaa |
300 |
Q |
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| T |
8448766 |
ttcttgttaccgttgcctttttttaacttctaaaatgctttgttttcgcccttatgtacttgtacagattgcagggaagaaaaagaaggtgaaggttaaa |
8448667 |
T |
|
| Q |
301 |
ggcaaagggaatgcatgggcatgcacgatatagtcattggccaaaggccacggcgtggtgaaaagcttgaagacacatgtacatat |
386 |
Q |
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| T |
8448666 |
ggcaaagggaatgcatgggcatgcacgatatagtcattggccaaaggccacggcgtggtgaaaagcttgaagacacatgtacatat |
8448581 |
T |
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