View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_25 (Length: 388)
Name: NF7711_low_25
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 378
Target Start/End: Original strand, 31930679 - 31931029
Alignment:
| Q |
29 |
taaagaaaataataagtaaataccaatttggctcaattagcatataatcgaaatttaggataaggnnnnnnnttatgctaacaatacaatttttaattta |
128 |
Q |
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| T |
31930679 |
taaagaaaataataagtaaataccgatttggctcaattagcatataatcgaaacttaggataaggaaaagaattacgttaacagtacaatttttaattta |
31930778 |
T |
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| Q |
129 |
ttcttctcgactaaatttatatggaagatgtatgatttggggagactcatttgaatccattactctcttttgagtcatacatgatttaggacttcggtga |
228 |
Q |
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| T |
31930779 |
ttctttagaactaaatt-atatggaacatacatgatttgggaagactcgtatgaatccattactctcttttgagtcatacatgatttaggacttcggtga |
31930877 |
T |
|
| Q |
229 |
ctttaatgttatttgtgaggatgcttcatgccttcacctggagtgtgacacccggtta--ttctagcatcgacttttatgaatcacgtgttagtaccatg |
326 |
Q |
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| T |
31930878 |
ctttaatgttatttgcaacgatgcttcatgccttcatttggagtgtgtcacccggttattttctagcatcgacctttctgaatcacatgttgataccatg |
31930977 |
T |
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| Q |
327 |
aaagtcaattcacttgtggcattggcaaagccaaggtttatccgtgtgtgcg |
378 |
Q |
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| T |
31930978 |
aaagtcaattcacttgtggcattggcaaagccaaggtttatccttgtgtgcg |
31931029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 217 - 376
Target Start/End: Original strand, 31932085 - 31932244
Alignment:
| Q |
217 |
ggacttcggtgactttaatgttatttgtgaggatgcttcatgccttcacctggagtgtgacacccggttattctagcatcgacttttatgaatcacgtgt |
316 |
Q |
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| T |
31932085 |
ggacttcgatgacgttaatgttatttgcgaggatgcttcatgccttcacctggagcatgccacccggatattctagcatcgacctttctgaatcacatgg |
31932184 |
T |
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| Q |
317 |
tagtaccatgaaagtcaattcacttgtggcattggcaaagccaaggtttatccgtgtgtg |
376 |
Q |
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| T |
31932185 |
tggtaccacgaaagtcaagccacttgtggcattgacagaaccaagatttttccttgtgtg |
31932244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 221 - 364
Target Start/End: Original strand, 32576245 - 32576388
Alignment:
| Q |
221 |
ttcggtgactttaatgttatttgtgaggatgcttcatgccttcacctggagtgtgacacccggttattctagcatcgacttttatgaatcacgtgttagt |
320 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||| |||||||||||||| ||| |||||||| || | || |
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| T |
32576245 |
ttcgatgactttaatgttatttgcgaggatgcttcatgccttcatctggagtgtgccaccaggtcattctagcatcgacctttttgaatcacatggtggt |
32576344 |
T |
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| Q |
321 |
accatgaaagtcaattcacttgtggcattggcaaagccaaggtt |
364 |
Q |
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| T |
32576345 |
accaccaaagccaagccacttgtggcattggcagagtcaaggtt |
32576388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34957610 - 34957639
Alignment:
| Q |
1 |
aagtattcgaccatccatttccggatcata |
30 |
Q |
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| T |
34957610 |
aagtattcgaccatccatttccggatcata |
34957639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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