View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_26 (Length: 385)
Name: NF7711_low_26
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 44060007 - 44059653
Alignment:
| Q |
18 |
atattatcccagatgaaaaagaaaacatattttatatcataaggccaacaagtttcctaaccttcacctcaactgggactatcggtgtaaagtattagat |
117 |
Q |
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| T |
44060007 |
atattatcccagatgaaaaagaaaacatattttatatcataaggccaacaagtttcctaaccttcacctcaactgggactatcggtgtaaagtattagat |
44059908 |
T |
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| Q |
118 |
gaactgtnnnnnnnnnnnnnnncagcacagtggaaagacattaaatcccatcctagctaataaaatcaatcacaaagtcttctttccaattcataggatc |
217 |
Q |
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| T |
44059907 |
gaactgtaaaaaaaaaa-----cagcacagtggaaagacattaaatcccatcctagctaataaaatcaatcacaaagtcttctttccaattcataggatc |
44059813 |
T |
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| Q |
218 |
gattccaaaagatttcaccnnnnnnnnnnnnn----tccaatggcacaagtaaaaataggtacgggtcttgttttggttatattggtcatgctatgtgca |
313 |
Q |
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| T |
44059812 |
gattccaaaagatttcaccaaaaaaaaaataaaaaatccaatggcacaagtaaaaataggtacgggtcttgttttggttatattggtcatgctatgtgca |
44059713 |
T |
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| Q |
314 |
ggaacgcctatggcaccatcaagatgcacgaatgtgttagtgaacctgtcaccatgtctc |
373 |
Q |
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| T |
44059712 |
ggagcgcctatggcaccatcaagatgcacgaatgtgttagtgaacctgtcaccatgtctc |
44059653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 184 - 373
Target Start/End: Original strand, 46837860 - 46838041
Alignment:
| Q |
184 |
caatcacaaagtcttctttccaattcataggatcgattccaaaagatttcaccnnnnnnnnnnnnntccaatggcacaagtaaaaataggtacgggtctt |
283 |
Q |
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| T |
46837860 |
caatcacaaagtcttcctaccatttcataggatcgattccaaaagatttcac-----acaaaaaattccaatggctcaagtaaaaataagtaagggtctt |
46837954 |
T |
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| Q |
284 |
gttttggttatattggtcatgctatgtgcaggaacgcctatggcaccatcaagatgcacgaatgtgttagtgaacctgtcaccatgtctc |
373 |
Q |
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| T |
46837955 |
gttttggttatattggccatgctatgtgcag--atg-ctatggcacaatcaagttgcacgaatgtgttagtaaacctatcaccatgtctc |
46838041 |
T |
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