View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_29 (Length: 373)
Name: NF7711_low_29
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 2564137 - 2564472
Alignment:
| Q |
12 |
tagtcccaaggaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatg |
111 |
Q |
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| T |
2564137 |
tagttccaaagaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatg |
2564236 |
T |
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| Q |
112 |
tgctttgatgccaggaagttactctctacagattnnnnnnnctcctggtatatatttacttataggtcaatcttatttcaatcaacattaattcattatt |
211 |
Q |
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| T |
2564237 |
tgctttgatgcaaggaagttactctctacagattaaaaaaacacctggtatatatttacttataggtcaatcttatttcaatcaacattaattcattatt |
2564336 |
T |
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| Q |
212 |
gatggaatgagctgaattagcatttgatttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaacca |
311 |
Q |
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| T |
2564337 |
gatggaatgagctgaa------------ttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaacca |
2564424 |
T |
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| Q |
312 |
tggtactattcattttctccaaaatcctaaacaaaaatcatattgatg |
359 |
Q |
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| T |
2564425 |
tggtactattcattttctccaaaatcctaaacaaaaataatattgatg |
2564472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 2574246 - 2574367
Alignment:
| Q |
238 |
atttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatc |
337 |
Q |
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| T |
2574246 |
atttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatc |
2574345 |
T |
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| Q |
338 |
ctaaacaaaaatcatattgatg |
359 |
Q |
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| T |
2574346 |
ttaaacaaaaaccatattgatg |
2574367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 141
Target Start/End: Original strand, 2574055 - 2574148
Alignment:
| Q |
48 |
aggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgccaggaagttactctctaca |
141 |
Q |
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| T |
2574055 |
aggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctaca |
2574148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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