View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_3 (Length: 749)
Name: NF7711_low_3
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 15 - 733
Target Start/End: Complemental strand, 46550548 - 46549845
Alignment:
| Q |
15 |
gttagccctagtataaaaagcctaatcaaaataatttcttctcttcgtcaactcaagaagtgaaaacaaaagctcatattttggaagagaagactcgttg |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
46550548 |
gttagccctattataaaaagcctaatcaaaataatttcttctcttcgtcaactcaagaagtgaaaacaaaagctcatgttttggaagagaagactagttg |
46550449 |
T |
|
| Q |
115 |
attatgacattaatgatagtgttttcgatgaagactcgtcgatgccactgggaagagcatcagtgtggccaattttccatggcagcagttcagtcaaata |
214 |
Q |
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| T |
46550448 |
attatgacattaatgatagtgttttcgatgaagactcgtcgatgccact-ggaagagcatcagtgtggccaattttccatggcagcagttcagtcaaata |
46550350 |
T |
|
| Q |
215 |
tgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttggaatttattatggctataaaggagacagcttccaaagtatctattg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
46550349 |
tgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttggaatttatgatggctttaaaggagacagcttcc-aagtatctattg |
46550251 |
T |
|
| Q |
315 |
agtgtattgtttgtttctttctgcttccttttcttacgttgtttttggttcttatttgtatgcatgcatgcatgcatatccaatagaaaaatacgtgtct |
414 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
46550250 |
agtgtattgtttgtttctttctgcttccgtttcttacgttgtttttggttcttatttgt----atgcatgcatgcatatccaatagaaaaa-acgtgtct |
46550156 |
T |
|
| Q |
415 |
tgttttaataccctttatttatggctttatgattgcacaacgacgatggcagcttttgcagaatatatgaatg-tttttattgtgaaagcttgctgactt |
513 |
Q |
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| T |
46550155 |
tgttttaatac----------tggctttatgattgcaccacgacgatggcagcttttgcagaatatatgaatgttttttattgtgaaagcttgctgactt |
46550066 |
T |
|
| Q |
514 |
ggtcaaaattaggtcaagtttaggagtattaattatgtattgtcattgaatgg-nnnnnnnatgattcgattcaaaactacgtcctgcttaactaaaagt |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46550065 |
ggtcaaaattaggtcaagtttaggagtattaattatgtattgtcattgaatggttttttttatgattcgattcaaaactacgtcctgcttaactaaaagt |
46549966 |
T |
|
| Q |
613 |
caaataccgagaacagcaattcatgcaaatttgaggcatgaatattcaccaccctccatagcaaaatatttattacctacttgctgtaacacataaactt |
712 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
46549965 |
caaataccgagaacagcaattcatgcaaatatgaggcatgaatatttaccacccaccatagcaaaatatttattacctacttgctgtaacacctaaacat |
46549866 |
T |
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| Q |
713 |
catcccttatgatctcaactt |
733 |
Q |
| |
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||||||||||||||||||||| |
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| T |
46549865 |
catcccttatgatctcaactt |
46549845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 46535272 - 46535147
Alignment:
| Q |
170 |
agcatcagtgtggccaattttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaatggtgcactcaaagttgg |
269 |
Q |
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||||||| ||||||||||| |||||||| || |||||||||||| | |||||||||||| | || ||||| |||||||||||||||||||| ||||| |
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| T |
46535272 |
agcatcactgtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaatggtgcactctttgttgg |
46535173 |
T |
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| Q |
270 |
aatttattatggctataaaggagaca |
295 |
Q |
| |
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| ||||| ||||||| ||||| |||| |
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| T |
46535172 |
agtttatgatggctacaaaggcgaca |
46535147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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