View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_30 (Length: 368)
Name: NF7711_low_30
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 32905147 - 32905502
Alignment:
| Q |
10 |
aagaatatatagagttattttaaacaatatccatcaaatccaaattataaaaatataggtggagtccaaaccatccattgaaattatgaaagcttggtga |
109 |
Q |
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| T |
32905147 |
aagaaaatacagagttattttaaacaatatccatcaaatcaaaattataaa--tataggtggagtccaaaccatccattgaaattatgaaagcttggtga |
32905244 |
T |
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| Q |
110 |
agtccggattattgatccacaagaaacatgcatttacacatttatcatattatcttcatagtgtgagttgttaaaccaaaataagagggttcaactttta |
209 |
Q |
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| T |
32905245 |
agtccggattattgatccacaagaaacatgcatttacacatttatcatattatcttcatagtgtgagttgttaaaccaaaataagagggttcaactttta |
32905344 |
T |
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| Q |
210 |
tactcaatagttcttaataaggaaaaaatatcagatttttgatgccgtatacctaacaccatatagaataatatttatccaatttcagtgtgggagtgtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |
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| T |
32905345 |
tactcaatagttcttaataaggaaaaaatatcagatttttgatgccgtatacctaacaccatatagaataatatatatccaattccagtctgggagtgtg |
32905444 |
T |
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| Q |
310 |
cttgaaatccgatgagtaaaataatcaatag--tatatatattattctttacattatt |
365 |
Q |
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| T |
32905445 |
cttgaaatccgatgagtgaaataatcaatagtatatatatattattctttacattatt |
32905502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 32870922 - 32871021
Alignment:
| Q |
16 |
atatagagttattttaaacaatatccatcaaatccaaattataaaaatataggtggagtccaaaccatccattgaaattatgaaagcttggtgaagtccg |
115 |
Q |
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||||||| |||| |||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| || ||| |||| |||||| |
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| T |
32870922 |
atatagaaatattgtaaacaatattcatcaaatcaaaattataaaagc-taggtggagttcaaaccatccattgaaattatcaaggctaggtggagtccg |
32871020 |
T |
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