View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7711_low_31 (Length: 367)

Name: NF7711_low_31
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7711_low_31
NF7711_low_31
[»] chr1 (23 HSPs)
chr1 (16-227)||(51062151-51062355)
chr1 (229-275)||(26240115-26240161)
chr1 (147-205)||(32893757-32893815)
chr1 (311-360)||(51062093-51062142)
chr1 (147-225)||(23532810-23532891)
chr1 (147-202)||(31165737-31165792)
chr1 (229-275)||(24847784-24847830)
chr1 (229-275)||(24848427-24848473)
chr1 (144-205)||(4408307-4408368)
chr1 (152-216)||(47763166-47763230)
chr1 (230-277)||(1099893-1099940)
chr1 (229-276)||(12449312-12449359)
chr1 (229-272)||(16449556-16449599)
chr1 (229-272)||(16459130-16459173)
chr1 (166-205)||(24754961-24755000)
chr1 (144-183)||(42669025-42669064)
chr1 (229-276)||(50657141-50657188)
chr1 (152-199)||(52650889-52650936)
chr1 (229-275)||(26240872-26240918)
chr1 (152-213)||(15939210-15939271)
chr1 (147-216)||(48497055-48497124)
chr1 (229-277)||(6942191-6942239)
chr1 (232-276)||(14166907-14166951)
[»] chr3 (26 HSPs)
chr3 (229-298)||(24514991-24515060)
chr3 (147-216)||(29491012-29491081)
chr3 (229-298)||(15287568-15287637)
chr3 (147-211)||(36260887-36260951)
chr3 (147-216)||(30537522-30537590)
chr3 (229-277)||(3584006-3584054)
chr3 (229-277)||(54308454-54308502)
chr3 (155-210)||(23377829-23377884)
chr3 (229-272)||(47571197-47571240)
chr3 (229-272)||(49349677-49349720)
chr3 (229-275)||(4706957-4707003)
chr3 (147-205)||(17549772-17549830)
chr3 (229-275)||(24511995-24512041)
chr3 (229-275)||(52924434-52924480)
chr3 (229-298)||(9831240-9831309)
chr3 (154-210)||(43369864-43369920)
chr3 (152-204)||(44108116-44108168)
chr3 (229-272)||(46883765-46883808)
chr3 (233-272)||(47571943-47571982)
chr3 (229-272)||(53344745-53344788)
chr3 (144-194)||(8795709-8795759)
chr3 (229-275)||(20807938-20807984)
chr3 (229-275)||(49350271-49350317)
chr3 (155-216)||(15863522-15863583)
chr3 (229-270)||(33761971-33762012)
chr3 (230-270)||(38557237-38557277)
[»] chr6 (5 HSPs)
chr6 (144-216)||(35029910-35029982)
chr6 (229-277)||(34423375-34423423)
chr6 (229-276)||(34423571-34423618)
chr6 (229-275)||(16718995-16719041)
chr6 (147-204)||(10479681-10479738)
[»] chr7 (23 HSPs)
chr7 (147-225)||(43230863-43230941)
chr7 (229-298)||(2888181-2888250)
chr7 (229-275)||(28007158-28007204)
chr7 (229-275)||(28007814-28007860)
chr7 (147-200)||(38362633-38362686)
chr7 (229-277)||(35892302-35892350)
chr7 (147-210)||(34596004-34596067)
chr7 (144-194)||(3371452-3371502)
chr7 (229-275)||(44120359-44120405)
chr7 (144-209)||(32450268-32450333)
chr7 (233-277)||(36611556-36611600)
chr7 (155-211)||(41947019-41947075)
chr7 (229-276)||(41965777-41965824)
chr7 (152-194)||(3839293-3839335)
chr7 (233-279)||(30581263-30581309)
chr7 (230-276)||(44876934-44876980)
chr7 (152-194)||(46435630-46435672)
chr7 (229-270)||(767137-767178)
chr7 (229-277)||(3314956-3315004)
chr7 (229-276)||(8593977-8594025)
chr7 (144-204)||(16941649-16941708)
chr7 (235-275)||(34807935-34807975)
chr7 (233-277)||(37783480-37783524)
[»] chr8 (13 HSPs)
chr8 (146-211)||(14636730-14636795)
chr8 (146-196)||(14628954-14629004)
chr8 (229-277)||(4402286-4402334)
chr8 (228-275)||(22632322-22632369)
chr8 (229-276)||(26847098-26847145)
chr8 (229-272)||(42094010-42094053)
chr8 (224-266)||(9277792-9277834)
chr8 (229-275)||(22632969-22633015)
chr8 (229-279)||(26847718-26847768)
chr8 (229-275)||(16911047-16911093)
chr8 (229-267)||(44656326-44656364)
chr8 (152-204)||(28452042-28452094)
chr8 (229-277)||(35347666-35347714)
[»] chr4 (23 HSPs)
chr4 (229-279)||(14527573-14527623)
chr4 (229-275)||(24666130-24666176)
chr4 (144-205)||(26635916-26635977)
chr4 (229-285)||(35606632-35606688)
chr4 (230-277)||(38519186-38519233)
chr4 (152-210)||(18521316-18521374)
chr4 (229-275)||(25725809-25725855)
chr4 (157-210)||(26003788-26003841)
chr4 (147-204)||(40549360-40549417)
chr4 (229-278)||(51387123-51387172)
chr4 (229-277)||(6056998-6057046)
chr4 (226-278)||(20143277-20143329)
chr4 (29-77)||(47808879-47808927)
chr4 (147-210)||(600535-600598)
chr4 (229-272)||(34451441-34451484)
chr4 (229-264)||(35605992-35606027)
chr4 (153-216)||(48831694-48831757)
chr4 (147-194)||(56094295-56094342)
chr4 (229-267)||(6258155-6258193)
chr4 (229-267)||(21527034-21527072)
chr4 (232-270)||(26393404-26393442)
chr4 (233-270)||(34450820-34450857)
chr4 (147-211)||(48827642-48827706)
[»] chr2 (17 HSPs)
chr2 (144-210)||(41437440-41437506)
chr2 (233-282)||(29387429-29387478)
chr2 (229-276)||(10173937-10173984)
chr2 (147-210)||(11862308-11862371)
chr2 (233-279)||(20606918-20606964)
chr2 (229-275)||(30201989-30202035)
chr2 (229-277)||(1141301-1141349)
chr2 (229-277)||(9157016-9157064)
chr2 (147-202)||(9298778-9298833)
chr2 (147-194)||(21437064-21437111)
chr2 (229-275)||(7754968-7755014)
chr2 (144-194)||(9158765-9158815)
chr2 (158-216)||(18077453-18077511)
chr2 (165-210)||(41649390-41649435)
chr2 (147-204)||(45707236-45707293)
chr2 (147-211)||(21508965-21509029)
chr2 (144-204)||(25319021-25319081)
[»] chr5 (19 HSPs)
chr5 (224-270)||(4082989-4083035)
chr5 (158-210)||(12920415-12920467)
chr5 (229-276)||(23253486-23253533)
chr5 (147-205)||(34367195-34367253)
chr5 (229-275)||(38129127-38129173)
chr5 (27-76)||(15089322-15089371)
chr5 (147-191)||(10099611-10099655)
chr5 (155-210)||(859832-859887)
chr5 (229-272)||(2029051-2029094)
chr5 (228-275)||(15561410-15561457)
chr5 (221-276)||(39937906-39937961)
chr5 (152-194)||(932645-932687)
chr5 (166-211)||(15089195-15089240)
chr5 (151-211)||(4241645-4241705)
chr5 (144-216)||(4249013-4249084)
chr5 (229-285)||(7489119-7489175)
chr5 (229-269)||(20476123-20476163)
chr5 (23-63)||(34366968-34367008)
chr5 (233-277)||(39466890-39466934)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 51062355 - 51062151
Alignment:
Q  16 aaatctattagtaaaaaattgcttatgtggacgtttattgctaagttgttagatccaaattaggttcacagatgcattgttcaattctaatctctaacaa 115  Q
    ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||  |||||    
T  51062355 aaatctaatagtcaaaaattgcttacgtggacgtttattgctaagttgttagatccaaattaggatca--------ttgttcaattctaatctgaaacaa 51062264  T
Q  116 atttgatcaattaattgtaacnnnnnnn-tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactat 214  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51062263 atttgatcaattaattgtaacaaaaaaaatcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactat 51062164  T
Q  215 aacatgaaaatat 227  Q
    |||||||||||||    
T  51062163 aacatgaaaatat 51062151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 26240115 - 26240161
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||    
T  26240115 gtggattctagggtgagggatcaattaagtccctcaccggtgaacca 26240161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 32893757 - 32893815
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattg 205  Q
    |||| |||| ||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  32893757 attacttgaattataatgttgttgttgaaatatttatctgtaaaattaagattgaattg 32893815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 51062142 - 51062093
Alignment:
Q  311 tatgtaatcatatttgatgtcataaatatctttttagacctttcatctca 360  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  51062142 tatgtaatcatgtttgatgtcataaatacctttttggacctttcatctca 51062093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 23532810 - 23532891
Alignment:
Q  147 attaattgatttataatgt---tgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataacatgaaaat 225  Q
    |||||||||||||||| ||   |||||| ||||||||||| | ||||||||||||| ||||||||||| |||| | ||||||    
T  23532810 attaattgatttataacgtcgttgttgatgaaatatttatctataaaattaagattaaattgaaaaacaataagaagaaaat 23532891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 31165792 - 31165737
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaa 202  Q
    |||| |||||||||||| |||||||| |||||||||| |||||||||||| |||||    
T  31165792 attacttgatttataatattgttgaacaaatatttatatgtaaaattaagcttgaa 31165737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 24847784 - 24847830
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  24847784 gtggattctagggtgagggttctattaagtccctcaccggtgtacca 24847830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 24848473 - 24848427
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  24848473 gtggattctagggtgagggttctattaagtccctcaccggtgtacca 24848427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 4408368 - 4408307
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattg 205  Q
    ||||||| |||||||||||| ||||| | |||||||||||   |||||||||||||||||||    
T  4408368 tcaattatttgatttataattttgttaatgaaatatttatcaataaaattaagattgaattg 4408307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 47763166 - 47763230
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    |||||||||||||||| ||| ||||| ||||| |||||||||| |||||||| || |||| ||||    
T  47763166 ttgatttataatgttgctgatgaaatgtttatctgtaaaattaggattgaatcgagaaacaataa 47763230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 1099893 - 1099940
Alignment:
Q  230 tggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||| |  |||||||||||||||||| |||||||||    
T  1099893 tggattctagggtgagagttctattaagtccctcaccgatgaaccact 1099940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 12449359 - 12449312
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    ||||||| |||||||||||| | ||||||||||||||||||| |||||    
T  12449359 gtggattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 16449556 - 16449599
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||||||  | |||||||||||||||||||||    
T  16449556 gtggattctagggtgagggttcaattaagtccctcaccggtgaa 16449599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 16459130 - 16459173
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||||||  | |||||||||||||||||||||    
T  16459130 gtggattctagggtgagggttcaattaagtccctcaccggtgaa 16459173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 24754961 - 24755000
Alignment:
Q  166 tgttgaagaaatatttatttgtaaaattaagattgaattg 205  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  24754961 tgttgatgaaatatttatttgtaaaattaggattgaattg 24755000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 42669025 - 42669064
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttat 183  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  42669025 tcaattacttgatttataatgttgttgatgaaatatttat 42669064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 50657188 - 50657141
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    |||||||||| || |||||||| ||||||||||||||||||| |||||    
T  50657188 gtggattctaaggcgagggagcaattaagtccctcaccggtggaccac 50657141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 52650936 - 52650889
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaattaagatt 199  Q
    ||||||||||||||| |||| |||||| ||||||||||||||| ||||    
T  52650936 ttgatttataatgttattgatgaaatacttatttgtaaaattaggatt 52650889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 26240918 - 26240872
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||  | ||||||||||||||||||| ||||    
T  26240918 gtggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 15939271 - 15939210
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaacta 213  Q
    ||||||||||||  | |||| ||||||||||| |||||||||| | ||||||| ||||||||    
T  15939271 ttgatttataatactattgatgaaatatttatatgtaaaattagggttgaattcaaaaacta 15939210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 48497124 - 48497055
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    |||| ||||||||||| ||||||||  ||||||| || | |||||||||| ||||||| |||||| ||||    
T  48497124 attatttgatttataaagttgttgataaaatattcatctctaaaattaagcttgaattcaaaaacaataa 48497055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 6942191 - 6942239
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||| ||||||||| | ||||||||| ||| ||||||||||||    
T  6942191 gtggattctaaggtgagggatcaattaagtccttcatcggtgaaccact 6942239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 14166951 - 14166907
Alignment:
Q  232 gattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    ||||||||||||||||  | |||||||||||||||||| ||||||    
T  14166951 gattctagggtgagggctcaattaagtccctcaccggtaaaccac 14166907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 24515060 - 24514991
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccactattaagagatgtcggattaat 298  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  24515060 gtggattctagggtgagggagttattaagtccctcaccggtggaccactattaagagacgtcagattaat 24514991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 29491012 - 29491081
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    |||| |||||||||||| |||| || ||||||||||| ||||||||||||||||||||||||||| ||||    
T  29491012 attatttgatttataatattgtcgatgaaatatttatctgtaaaattaagattgaattgaaaaacaataa 29491081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 15287568 - 15287637
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccactattaagagatgtcggattaat 298  Q
    |||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||  ||| |||||||    
T  15287568 gtggattctagggtgagggtccaattaagtccctcaccggtggaccactattaagaggcgtcagattaat 15287637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 36260951 - 36260887
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaac 211  Q
    |||| |||||||||||| |||||||||||||||||||  ||||||||||| ||||||| ||||||    
T  36260951 attacttgatttataatattgttgaagaaatatttatccgtaaaattaagtttgaattcaaaaac 36260887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 30537522 - 30537590
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    ||||||||||||| ||||||||||| ||| ||||||||||| |||||| |||||||||| ||||| ||||    
T  30537522 attaattgatttacaatgttgttgatgaactatttatttgt-aaattaggattgaattggaaaacaataa 30537590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 3584006 - 3584054
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  3584006 gtggattctagggtgagggagcaattaaatccctcaccggtgtaccact 3584054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 54308454 - 54308502
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccact 54308502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 23377884 - 23377829
Alignment:
Q  155 atttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    |||| |||||||||||| ||||||||||| |||| |||||| ||||||||||||||    
T  23377884 atttttaatgttgttgatgaaatatttatctgtacaattaaaattgaattgaaaaa 23377829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 47571197 - 47571240
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||||||| | |||||||||||||||||||||    
T  47571197 gtggattctagggtgagggatcaattaagtccctcaccggtgaa 47571240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 49349677 - 49349720
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||||||| | |||||||||||||||||||||    
T  49349677 gtggattctagggtgagggatcaattaagtccctcaccggtgaa 49349720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 4707003 - 4706957
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  4707003 gtggattctagggtgagggttctattaagtccctcaccggtgtacca 4706957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 17549772 - 17549830
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattg 205  Q
    |||| |||||||| ||||||| ||| ||||||||||| |||||||||| ||||||||||    
T  17549772 attagttgatttacaatgttgatgatgaaatatttatctgtaaaattatgattgaattg 17549830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 24511995 - 24512041
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    ||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  24511995 gtggattttagggtgagggagcaattaagtccctcaccggtggacca 24512041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 52924480 - 52924434
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  52924480 gtggattctaaggtgagggagcaattaagtccctcaccggtgcacca 52924434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 9831309 - 9831240
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccactattaagagatgtcggattaat 298  Q
    ||||||||| |||||||||  | |||||||||||||| |||| ||||||||||||||  ||| |||||||    
T  9831309 gtggattctggggtgagggtccaattaagtccctcactggtggaccactattaagaggcgtcagattaat 9831240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 43369920 - 43369864
Alignment:
Q  154 gatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    |||||||||| |||||||  ||||||||||||||||||||| | ||||||| |||||    
T  43369920 gatttataattttgttgattaaatatttatttgtaaaattatgcttgaattcaaaaa 43369864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 44108168 - 44108116
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaatt 204  Q
    |||||||||||||||||| |  |||||||||| |||||||||||| |||||||    
T  44108168 ttgatttataatgttgttcataaaatatttatgtgtaaaattaagtttgaatt 44108116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 46883765 - 46883808
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||| ||||||||||||||  |||||||||||||||||||||||    
T  46883765 gtggcttctagggtgagggctctattaagtccctcaccggtgaa 46883808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 47571982 - 47571943
Alignment:
Q  233 attctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  47571982 attctagggtgagggatcaattaagtccctcaccggtgaa 47571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 53344788 - 53344745
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  53344788 gtggattctagggtgagggatcaatcaagtccctcaccggtgaa 53344745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 8795709 - 8795759
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaatta 194  Q
    ||||||| |||||||||||| |||||||  |||||||||| ||||||||||    
T  8795709 tcaattacttgatttataatattgttgatcaaatatttatatgtaaaatta 8795759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 20807938 - 20807984
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||  | ||||||||||||||||||| ||||    
T  20807938 gtggattctagggtgagggttcaattaagtccctcaccggtgtacca 20807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 49350317 - 49350271
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||  | |||||||||||| |||||||||||    
T  49350317 gtggattctagggtgagggttcaattaagtccctcgccggtgaacca 49350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 15863583 - 15863522
Alignment:
Q  155 atttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    ||||||||| |||||||  ||||||||||| |||||||||  ||||||||| ||||| ||||    
T  15863583 atttataatattgttgataaaatatttattagtaaaattataattgaattggaaaacaataa 15863522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 33761971 - 33762012
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtg 270  Q
    |||||||||||||||||||  ||||||||| |||||||||||    
T  33761971 gtggattctagggtgagggctctattaagttcctcaccggtg 33762012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 38557277 - 38557237
Alignment:
Q  230 tggattctagggtgagggagctattaagtccctcaccggtg 270  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  38557277 tggattttagggtgagggctctattaagtccctcaccggtg 38557237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 35029982 - 35029910
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    |||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||    
T  35029982 tcaattaatttatttataacgttgttgatgaaatatttatctgtaaaattaatattgaattgaaaaacaataa 35029910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 34423375 - 34423423
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    ||||||||||| |||||||||| |||||||||||||||| || ||||||    
T  34423375 gtggattctagtgtgagggagcaattaagtccctcaccgatgtaccact 34423423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 34423618 - 34423571
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    |||||||||||||||||| ||| |||||||||||||||| || |||||    
T  34423618 gtggattctagggtgaggaagcaattaagtccctcaccgatgtaccac 34423571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 16719041 - 16718995
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||| ||| | ||||||||||||||||||| ||||    
T  16719041 gtggattctagggtgacggatcaattaagtccctcaccggtggacca 16718995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 10479681 - 10479738
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaatt 204  Q
    |||| ||||||||||||||| || |  ||||||||||||||||||||| | |||||||    
T  10479681 attacttgatttataatgtttttaatcaaatatttatttgtaaaattaggcttgaatt 10479738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 43230941 - 43230863
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataacatgaaaat 225  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||| |||| ||||||| ||||| |||| ||||||||    
T  43230941 attaattgatttatattgttgttgatgaaatatttatctgtaaaataaagagtgaattggaaaacaataagatgaaaat 43230863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 2888181 - 2888250
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccactattaagagatgtcggattaat 298  Q
    ||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||| |||||||    
T  2888181 gtggattttagggtgagagagctattaagtccttcaccggtggaccactattaagagacgtcagattaat 2888250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 28007158 - 28007204
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  28007158 gtggattctagggtgagggagcaattaagtccctcaccggtggacca 28007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 28007860 - 28007814
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  28007860 gtggattctagggtgatggagctattaagtccctcaccggtggacca 28007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 38362633 - 38362686
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattg 200  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||    
T  38362633 attaattgatttataatattgttgatgaaatattaatttgtaaaattaaaattg 38362686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 35892350 - 35892302
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  35892350 gtggattctagggtgagggagcaattaaatccctcaccggtgtaccact 35892302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 34596067 - 34596004
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    |||| ||||||||||||||||||||  |||||||||| | |||||||||| ||||||| |||||    
T  34596067 attacttgatttataatgttgttgatcaaatatttatctttaaaattaagcttgaattcaaaaa 34596004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 3371452 - 3371502
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaatta 194  Q
    |||||||||||||||||| ||||||||| ||||||||||| | ||||||||    
T  3371452 tcaattaattgatttatattgttgttgatgaaatatttatctataaaatta 3371502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 44120359 - 44120405
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  44120359 gtggattctaaggtgagggagcaattaagtccctcaccggtgtacca 44120405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 32450333 - 32450268
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaa 209  Q
    |||||||||| ||||||||| ||||||| ||||||||| | |||||||||||  ||||||| ||||    
T  32450333 tcaattaatttatttataatattgttgatgaaatatttgtgtgtaaaattaaatttgaattcaaaa 32450268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 36611556 - 36611600
Alignment:
Q  233 attctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  36611556 attctagggtgagggttcaattaagtccctcaccggtgaaccact 36611600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 41947019 - 41947075
Alignment:
Q  155 atttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaac 211  Q
    ||||||||| ||||||| | ||||||||||| |||||||||| ||||||| ||||||    
T  41947019 atttataatattgttgatggaatatttatttataaaattaagcttgaatttaaaaac 41947075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 41965824 - 41965777
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    |||||||||||||||||||  | ||||||||||||||||||| |||||    
T  41965824 gtggattctagggtgagggtccaattaagtccctcaccggtggaccac 41965777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 3839293 - 3839335
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaatta 194  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  3839293 ttgatttataatgttgttgatgaaatatttttctgtaaaatta 3839335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 30581309 - 30581263
Alignment:
Q  233 attctagggtgagggagctattaagtccctcaccggtgaaccactat 279  Q
    |||||||||||||||  | ||||||||||||||| ||||||||||||    
T  30581309 attctagggtgagggttcaattaagtccctcaccagtgaaccactat 30581263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 44876980 - 44876934
Alignment:
Q  230 tggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    ||||||||||||||||||| | |||||||||||||||| || |||||    
T  44876980 tggattctagggtgagggatcaattaagtccctcaccgatggaccac 44876934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 46435672 - 46435630
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaatta 194  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||    
T  46435672 ttgatttataatattgttgatgaaatatttatttctaaaatta 46435630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 767137 - 767178
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtg 270  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  767137 gtggattctagggtgagggtccaattaagtccctcaccggtg 767178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 3314956 - 3315004
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||| ||||||||  | ||||||||||||||||||| ||||||    
T  3314956 gtggattctacggtgagggttcaattaagtccctcaccggtgtaccact 3315004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 8594025 - 8593977
Alignment:
Q  229 gtggattctagggtgagggagcta-ttaagtccctcaccggtgaaccac 276  Q
    ||||||||||||||||||||  || ||||||||||||||||| ||||||    
T  8594025 gtggattctagggtgagggaattaattaagtccctcaccggtaaaccac 8593977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 16941708 - 16941649
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaatt 204  Q
    ||||||| |||||||||||||||||| | |||| |||||| || ||||||| |||||||||    
T  16941708 tcaattacttgatttataatgttgtttatgaaacatttatgtg-aaaattatgattgaatt 16941649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 34807935 - 34807975
Alignment:
Q  235 tctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||| ||||||||||| ||||||||||||||||||| ||||    
T  34807935 tctaaggtgagggagcaattaagtccctcaccggtggacca 34807975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 37783524 - 37783480
Alignment:
Q  233 attctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||  ||| ||||||||||||||||| ||||||    
T  37783524 attctagggtgagggctctactaagtccctcaccggtggaccact 37783480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 14636795 - 14636730
Alignment:
Q  146 aattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaac 211  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||||||| ||||||    
T  14636795 aattaattgatttataatattgctgatgaaatatttatttgtaaaattaagcttgaattcaaaaac 14636730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 14629004 - 14628954
Alignment:
Q  146 aattaattgatttataatgttgttgaagaaatatttatttgtaaaattaag 196  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  14629004 aattaattgatttataatattgttgatgaaatatttatttgtaaaattaag 14628954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 4402334 - 4402286
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  4402334 gtggattctagggtgagggttctattaagtccctcaccggtgaaccact 4402286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 22632322 - 22632369
Alignment:
Q  228 tgtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  22632322 tgtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 26847098 - 26847145
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||    
T  26847098 gtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 26847145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 42094010 - 42094053
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||||||| | |||||||||||||||||||||    
T  42094010 gtggattctagggtgagggatcaattaagtccctcaccggtgaa 42094053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 9277834 - 9277792
Alignment:
Q  224 atattgtggattctagggtgagggagctattaagtccctcacc 266  Q
    |||| |||||||||||||||||||||| |||||||||||||||    
T  9277834 atatggtggattctagggtgagggagcaattaagtccctcacc 9277792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 22633015 - 22632969
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  22633015 gtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 26847768 - 26847718
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccactat 279  Q
    |||||||||||| ||||||| | ||||||| ||||||||||||||||||||    
T  26847768 gtggattctaggatgagggatcaattaagttcctcaccggtgaaccactat 26847718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 16911093 - 16911047
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||  | ||||||||||||||||||| ||||    
T  16911093 gtggattctagggtgagggctcaattaagtccctcaccggtgtacca 16911047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 44656364 - 44656326
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccg 267  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  44656364 gtggattctaaggtgagggagcaattaagtccctcaccg 44656326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 28452094 - 28452042
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaatt 204  Q
    |||||||||||| ||||| | ||||||||||| | |||||||| |||||||||    
T  28452094 ttgatttataatattgttaatgaaatatttatctttaaaattaggattgaatt 28452042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 35347666 - 35347714
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    ||||||| |||| ||||||  ||||||||||||| ||||||||||||||    
T  35347666 gtggattttaggatgagggttctattaagtcccttaccggtgaaccact 35347714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 14527623 - 14527573
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccactat 279  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  14527623 gtggattctagggtgagggatcaattaagtccctcaccggtgaaccactat 14527573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 24666130 - 24666176
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||    
T  24666130 gtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 26635916 - 26635977
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattg 205  Q
    ||||||| ||||| ||||||||||||||  |||||||||| |||||||||| ||||||||||    
T  26635916 tcaattacttgatctataatgttgttgataaaatatttatctgtaaaattatgattgaattg 26635977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 35606688 - 35606632
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccactattaagag 285  Q
    |||| ||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||    
T  35606688 gtgggttctagggtgagggagctactaagtccctcatcggtggaccaccattaagag 35606632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 38519233 - 38519186
Alignment:
Q  230 tggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    ||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  38519233 tggattctagggtgaaggagcaattaagtccctcaccggtgtaccact 38519186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 18521374 - 18521316
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    |||||||||||| ||||||| | |||||||||||||||||||| | ||||||| |||||    
T  18521374 ttgatttataatattgttgatggaatatttatttgtaaaattaggcttgaattcaaaaa 18521316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 25725855 - 25725809
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    ||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  25725855 gtggagtctagggtgagggagcaattaagtccctcaccggtggacca 25725809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 26003841 - 26003788
Alignment:
Q  157 ttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    ||||||| ||||||| ||||||||||| |||||||||||| ||||||| |||||    
T  26003841 ttataatattgttgatgaaatatttatctgtaaaattaagcttgaattcaaaaa 26003788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 40549360 - 40549417
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaatt 204  Q
    |||| |||| ||||||| |||||||  ||||||||||||||||||||| |||||||||    
T  40549360 attacttgacttataatattgttgataaaatatttatttgtaaaattatgattgaatt 40549417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 51387172 - 51387123
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccacta 278  Q
    ||||||| |||||||||||| | |||| ||||||||||||||||||||||    
T  51387172 gtggattatagggtgagggatcaattacgtccctcaccggtgaaccacta 51387123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 6057046 - 6056998
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||||||  ||| ||||||||||||||||| ||||||    
T  6057046 gtggattctagggtgagggttctactaagtccctcaccggtggaccact 6056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 20143277 - 20143329
Alignment:
Q  226 attgtggattctagggtgagggagctattaagtccctcaccggtgaaccacta 278  Q
    ||||||||||||||||||||||  | | ||||||||||||||||| |||||||    
T  20143277 attgtggattctagggtgagggctcaactaagtccctcaccggtgtaccacta 20143329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 47808879 - 47808927
Alignment:
Q  29 aaaaattgcttatgtggacgtttattgctaagttgttagatccaaatta 77  Q
    ||||| |||||||||||| |||||||||||||||| ||| |||||||||    
T  47808879 aaaaagtgcttatgtggatgtttattgctaagttggtaggtccaaatta 47808927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 600535 - 600598
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    |||| ||||||| |||| ||||||| ||||| ||||| |||||||||||| ||||||| |||||    
T  600535 attacttgatttgtaatattgttgatgaaatgtttatatgtaaaattaagcttgaattaaaaaa 600598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 34451484 - 34451441
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||||||| | ||||||| |||||||||||||    
T  34451484 gtggattctagggtgagggatcaattaagtacctcaccggtgaa 34451441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 35605992 - 35606027
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctca 264  Q
    |||||||||||||||||||||| |||||||||||||    
T  35605992 gtggattctagggtgagggagcaattaagtccctca 35606027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 48831757 - 48831694
Alignment:
Q  153 tgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    |||||||||||||||| ||  |||||||||| ||||||||||  ||| ||||||||||| ||||    
T  48831757 tgatttataatgttgtagattaaatatttatatgtaaaattagtatttaattgaaaaacaataa 48831694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 56094295 - 56094342
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaatta 194  Q
    |||| ||||||||||||||||||||  |||||||||| ||||||||||    
T  56094295 attacttgatttataatgttgttgatcaaatatttatctgtaaaatta 56094342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 6258193 - 6258155
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccg 267  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  6258193 gtggattctaaggtgagggagcaattaagtccctcaccg 6258155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 21527072 - 21527034
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccg 267  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  21527072 gtggattctagggtgagggctctattaagtccctcaccg 21527034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 26393442 - 26393404
Alignment:
Q  232 gattctagggtgagggagctattaagtccctcaccggtg 270  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  26393442 gattctagggtgagggctctattaagtccctcaccggtg 26393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 34450820 - 34450857
Alignment:
Q  233 attctagggtgagggagctattaagtccctcaccggtg 270  Q
    |||||||||||||||| | |||||||||||||||||||    
T  34450820 attctagggtgagggatcaattaagtccctcaccggtg 34450857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 48827642 - 48827706
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaac 211  Q
    |||| |||||||||||| |||| || |||||||| |||||||||||||   ||||||| ||||||    
T  48827642 attacttgatttataatattgtagatgaaatattaatttgtaaaattatacttgaatttaaaaac 48827706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 41437440 - 41437506
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    ||||||| || ||||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||    
T  41437440 tcaattacttaatttataatgttgttgatgaaatatttatttataaaattaagtttgaattaaaaaa 41437506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 29387429 - 29387478
Alignment:
Q  233 attctagggtgagggagctattaagtccctcaccggtgaaccactattaa 282  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||||    
T  29387429 attctaggatgagggagctattaagttcctcaccggtggaccactattaa 29387478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 10173937 - 10173984
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||    
T  10173937 gtggattctagggtgagggttctgttaagtccctcaccggtgaaccac 10173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 11862371 - 11862308
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    |||| |||||||||||| ||||||| ||||||||||| |||||| ||| |||||||||| ||||    
T  11862371 attacttgatttataattttgttgatgaaatatttatctgtaaagttaggattgaattggaaaa 11862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 20606964 - 20606918
Alignment:
Q  233 attctagggtgagggagctattaagtccctcaccggtgaaccactat 279  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||    
T  20606964 attctagggtgagggttcaattaagtccctcaccggtgaaccactat 20606918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 30202035 - 30201989
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  30202035 gtggattctaaggtgagggagcaattaagtccctcaccggtggacca 30201989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 1141301 - 1141349
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||| ||||||||||| || |||||||||||||||| ||||||    
T  1141301 gtggattctaaggtgagggagcaatgaagtccctcaccggtggaccact 1141349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 9157016 - 9157064
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    ||||||||||||| |||||  ||||||| ||||||||||||||||||||    
T  9157016 gtggattctagggcgagggttctattaaatccctcaccggtgaaccact 9157064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 9298778 - 9298833
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaa 202  Q
    |||| |||||||||||| |||||||  |||||||||| |||||||||||| |||||    
T  9298778 attatttgatttataatattgttgatcaaatatttatatgtaaaattaagcttgaa 9298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 21437064 - 21437111
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaatta 194  Q
    |||| ||||||||||||||||||||  |||||||||| ||||||||||    
T  21437064 attacttgatttataatgttgttgatcaaatatttatctgtaaaatta 21437111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 7755014 - 7754968
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||||||||||||| | ||||||||| ||||||||| ||||    
T  7755014 gtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 9158765 - 9158815
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaatta 194  Q
    |||||| |||||||| |||| ||||||| ||||||||||||| ||||||||    
T  9158765 tcaatttattgatttgtaatattgttgatgaaatatttatttataaaatta 9158815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 18077511 - 18077453
Alignment:
Q  158 tataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    ||||||| |||||| |||||||||||  |||||||||||||| || |||||||| ||||    
T  18077511 tataatggtgttgatgaaatatttatcggtaaaattaagattaaagtgaaaaacgataa 18077453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 41649390 - 41649435
Alignment:
Q  165 ttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    ||||| ||||||||||||||| |||||||||  |||||||||||||    
T  41649390 ttgttaaagaaatatttatttataaaattaaatttgaattgaaaaa 41649435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 45707236 - 45707293
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaatt 204  Q
    ||||| ||||||||||  |||| || ||||||||||||| |||||||||| |||||||    
T  45707236 attaactgatttataaaattgtggatgaaatatttatttctaaaattaagcttgaatt 45707293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 21508965 - 21509029
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaac 211  Q
    |||| |||||||||||||||||||| | |||||||||   |||||||| | |||| |||||||||    
T  21508965 attagttgatttataatgttgttgatggaatatttatcaataaaattagggttgatttgaaaaac 21509029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 25319021 - 25319081
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaatt 204  Q
    ||||||| || ||||||||||||||||| ||||||||||  |  ||||||| |||||||||    
T  25319021 tcaattacttaatttataatgttgttgatgaaatatttacctccaaaattatgattgaatt 25319081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 4082989 - 4083035
Alignment:
Q  224 atattgtggattctagggtgagggagctattaagtccctcaccggtg 270  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||    
T  4082989 atatggtggattctagggtgagggagctattaagtccctcatcggtg 4083035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 12920467 - 12920415
Alignment:
Q  158 tataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    |||||||||||||| |||||||||||||||||||||| |||| ||||| ||||    
T  12920467 tataatgttgttgatgaaatatttatttgtaaaattaggatttaattggaaaa 12920415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 23253533 - 23253486
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||    
T  23253533 gtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 23253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 34367195 - 34367253
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattg 205  Q
    |||| |||||||| ||||||||||| ||||||||||| | |||||||| ||||||||||    
T  34367195 attacttgatttaaaatgttgttgatgaaatatttatctctaaaattaggattgaattg 34367253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 38129127 - 38129173
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  38129127 gtggattctaaggtgagggagcaattaagtccctcaccggtgtacca 38129173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 15089371 - 15089322
Alignment:
Q  27 taaaaaattgcttatgtggacgtttattgctaagttgttagatccaaatt 76  Q
    ||||||| ||||||||| ||||||||||||||||||| ||| ||||||||    
T  15089371 taaaaaagtgcttatgttgacgtttattgctaagttggtaggtccaaatt 15089322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 10099655 - 10099611
Alignment:
Q  147 attaattgatttataatgttgttgaagaaatatttatttgtaaaa 191  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||    
T  10099655 attacttgatttataatgttgttgatgaaatttttatttgtaaaa 10099611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 859832 - 859887
Alignment:
Q  155 atttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaa 210  Q
    ||||||||  ||||||| ||||| |||||||||||||||||| ||||||| |||||    
T  859832 atttataaaattgttgatgaaatttttatttgtaaaattaagtttgaattcaaaaa 859887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 2029094 - 2029051
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaa 272  Q
    |||||||||||||||||||  | |||||||||||||||||||||    
T  2029094 gtggattctagggtgagggctcaattaagtccctcaccggtgaa 2029051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 15561410 - 15561457
Alignment:
Q  228 tgtggattctagggtgagggagctattaagtccctcaccggtgaacca 275  Q
    ||||||||||||||||||||  ||| ||||||||||||||||| ||||    
T  15561410 tgtggattctagggtgagggctctactaagtccctcaccggtggacca 15561457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 39937961 - 39937906
Alignment:
Q  221 aaaatattgtggattctagggtgagggagctattaagtccctcaccggtgaaccac 276  Q
    ||||||| |||||||||||||||||||  |  |||||||||||||||||| |||||    
T  39937961 aaaatatggtggattctagggtgagggttcagttaagtccctcaccggtggaccac 39937906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 932645 - 932687
Alignment:
Q  152 ttgatttataatgttgttgaagaaatatttatttgtaaaatta 194  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||    
T  932645 ttgatttataatattgttgatgaaatatttatctgtaaaatta 932687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 15089240 - 15089195
Alignment:
Q  166 tgttgaagaaatatttatttgtaaaattaagattgaattgaaaaac 211  Q
    |||||| ||||||||||| |||||||||| ||||||||||| ||||    
T  15089240 tgttgatgaaatatttatctgtaaaattaggattgaattgagaaac 15089195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 4241705 - 4241645
Alignment:
Q  151 attgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaac 211  Q
    ||||||| |||||||| ||||  ||||||| |||| ||||| |||||||||||||| ||||    
T  4241705 attgattcataatgttcttgattaaatattcatttctaaaactaagattgaattgacaaac 4241645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 4249084 - 4249013
Alignment:
Q  144 tcaattaattgatttataatgttgttgaagaaatatttatttgtaaaattaagattgaattgaaaaactataa 216  Q
    ||||||| || |||||||||||| || | ||| ||||||| | |||||||||||||||||||| |||| ||||    
T  4249084 tcaattacttaatttataatgttctttatgaa-tatttatatctaaaattaagattgaattgacaaacaataa 4249013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 7489175 - 7489119
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggtgaaccactattaagag 285  Q
    |||||||||| ||||||||  |||| ||||||||||| |||| |||| |||||||||    
T  7489175 gtggattctaaggtgagggtcctatcaagtccctcactggtggaccattattaagag 7489119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 20476163 - 20476123
Alignment:
Q  229 gtggattctagggtgagggagctattaagtccctcaccggt 269  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  20476163 gtggattttagggtgagggatcaattaagtccctcaccggt 20476123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 34366968 - 34367008
Alignment:
Q  23 ttagtaaaaaattgcttatgtggacgtttattgctaagttg 63  Q
    ||||| ||||| ||||||||||||||||||||| |||||||    
T  34366968 ttagttaaaaagtgcttatgtggacgtttattgttaagttg 34367008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 39466890 - 39466934
Alignment:
Q  233 attctagggtgagggagctattaagtccctcaccggtgaaccact 277  Q
    |||||||||||||||  | ||||||||||||||||||| ||||||    
T  39466890 attctagggtgagggtccaattaagtccctcaccggtggaccact 39466934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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