View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_33 (Length: 352)
Name: NF7711_low_33
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 23272654 - 23272824
Alignment:
| Q |
18 |
atcatgatggttaagagtgtaagggtaataaaatggttcacaaaatattggtaaaaaagtttaacatacttgtgttttgatgagtttgaggaatttggca |
117 |
Q |
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| T |
23272654 |
atcatgatggttaagagtgtaagggtaataaaatggttcacaaaatattggtaaaaaagtttaacatacttgtgttttgatgagtttgaggaatttggca |
23272753 |
T |
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| Q |
118 |
acattgaaggcattttagttagcacttcgatgaaaacaagaaaggtacaaaggtaatgatgttgtggggtg |
188 |
Q |
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| T |
23272754 |
acattgaaggcattttagttagcacttcgatgaaaacaagaaaggtacaaaggtaatgatgttgtggggtg |
23272824 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 23271366 - 23271283
Alignment:
| Q |
253 |
taatagaagcattaaaacacctgttaatggaccttgggaagattgcattgatcgctatccagttcatattcctgagattgttaa |
336 |
Q |
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| T |
23271366 |
taatagaagcattaaaacacctgttaatggaccttgggaagattgcattgatcgctatccagttcatattcctgagattgttaa |
23271283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 50087101 - 50087022
Alignment:
| Q |
257 |
agaagcattaaaacacctgttaatggaccttgggaagattgcattgatcgctatccagttcatattcctgagattgttaa |
336 |
Q |
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| T |
50087101 |
agaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaa |
50087022 |
T |
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