View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_39 (Length: 314)
Name: NF7711_low_39
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 166 - 304
Target Start/End: Original strand, 16488899 - 16489037
Alignment:
| Q |
166 |
tttctttagtttggcagtttaaatctatgttttgctagattgccacagatctgtttaagcatgttatcttgattgctttagccttccaaccagggtacag |
265 |
Q |
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| T |
16488899 |
tttctttagtttggcagtttaaatctatgttttgctggattgccacagatctgtttaagcacgttatcttgattgctttagccttccaaccagggtacag |
16488998 |
T |
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| Q |
266 |
taattttgattcgtctaactcaagaaaaatgatgatatt |
304 |
Q |
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| T |
16488999 |
taattttgattcgtctaactcaagaaaaatgatgatatt |
16489037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 16488770 - 16488904
Alignment:
| Q |
1 |
tcagtggtgttgcgatccttgatattgtgtaaaattgtgttcaagtactgtgatagagccacaattgtggttgcgatgcagagaattaaaaaacctctac |
100 |
Q |
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| T |
16488770 |
tcagtggtgttgcgatccttgatattgtgtaaaattgtgttcaagtactgtgatagagccataattgtggttgcgatgcagagaattaaaaagcctctac |
16488869 |
T |
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| Q |
101 |
attgcagccgtaatctgtttggcttggtttttctt |
135 |
Q |
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| T |
16488870 |
attgcagccgttatctgtttggcttggtttttctt |
16488904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 79 - 301
Target Start/End: Original strand, 50514018 - 50514241
Alignment:
| Q |
79 |
cagagaattaaaaaacctctacattgcagccgtaatctgtttggcttggtttttcttaaccttaaacgatgcttctcctgggttatatttctttagtttg |
178 |
Q |
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| T |
50514018 |
cagagcattaaaaagcctcgacattgcagcctttatctggttggcttcgtctttcttaaccttaaacaatgcttctcctaggtcatatttctttagtttg |
50514117 |
T |
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| Q |
179 |
gcagtttaaatctatgttttgctagattgccacagatctg-tttaagcatgttatcttgattgctttagccttccaaccagggtacagtaattttgattc |
277 |
Q |
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| T |
50514118 |
gcagtttaaatctttgttttgctggattgccacaaatctgttttgagcacattatcttgattgatgtagctttcaaaccagggtacagtaattttgattc |
50514217 |
T |
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| Q |
278 |
gtctaactcaagaaaaatgatgat |
301 |
Q |
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| T |
50514218 |
gtctaactcaagaaaaataatgat |
50514241 |
T |
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