View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_41 (Length: 302)
Name: NF7711_low_41
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 290
Target Start/End: Complemental strand, 47422639 - 47422369
Alignment:
| Q |
20 |
ataagttgagaaaataaatgaatcatttgaacgcaatcacatgtgtcggtgctgcatagagtattcttaagctagttaaaatctattagatttttgctat |
119 |
Q |
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| T |
47422639 |
ataagttgagaaaataaatgaatcatttgaacgcaattacatgtgtcggtgctgcatagagtattcttaagctagttaaaatctattagatttttgctat |
47422540 |
T |
|
| Q |
120 |
cattgttatcaaagttagttaggagtttgttagaggcctaactgtttttatctactctatataaacagagccaatgtgtaaatcattcaatcaaatattc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422539 |
cattgttatcaaagttagttaggagtttgttagaggcctaactgtttttatctactctatataaacagagccaatgtgtaaatcattcaatcaaatattc |
47422440 |
T |
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| Q |
220 |
aattcagatttgtgttaacttccaatttcttgagttttcctttatggacccatctattgttattcttctca |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47422439 |
aattcagatttgtgttaacttccaatttcttgagttttcctttatggacccatctattgttattcttctca |
47422369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 40626691 - 40626656
Alignment:
| Q |
35 |
aaatgaatcatttgaacgcaatcacatgtgtcggtg |
70 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
40626691 |
aaatgaatcatttgaacgcaatcacatgtttcggtg |
40626656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 20204260 - 20204292
Alignment:
| Q |
35 |
aaatgaatcatttgaacgcaatcacatgtgtcg |
67 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
20204260 |
aaatgaatcatttgaacgtaatcacatgtgtcg |
20204292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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