View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_43 (Length: 287)
Name: NF7711_low_43
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5161767 - 5162005
Alignment:
| Q |
1 |
tacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcggtatggcttggttttattacattagtaaatttgcacgtannnnn |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
5161767 |
tacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcg-tatggcttggttttattacattagtaagtttgcacgatttttt |
5161865 |
T |
|
| Q |
101 |
nnnccaacttttccattgtactgaagagtgtccgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5161866 |
tttccaacttttccattgtactgaagagtgtacgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcgt |
5161965 |
T |
|
| Q |
201 |
taatttcagacagtttgatgctggacatgattttaagctc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5161966 |
taatttcagacagtttgatgctggacatgattttaagctc |
5162005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4855322 - 4855083
Alignment:
| Q |
1 |
tacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcggtatggcttggttttattacattagtaaatttgcacgtannnnn |
100 |
Q |
| |
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|||||||||||| | || ||||| ||||||||||| |||||| | |||||||| | |||| |||||||||||||||||||| |||| | ||| |
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| T |
4855322 |
tacataacaatactactgaccttcataacagtgttgc--atcaatccacgttggcgtt-tggcctggttttattacattagtaagtttgtaggtatcttt |
4855226 |
T |
|
| Q |
101 |
nnnccaacttttccattgtactgaagagtgtccgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcgt |
200 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | | |
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| T |
4855225 |
tttccaacttttccattgtattaaagagtgtccgtagtacctgttgaaactttatgtggagtctcaaatatttgggtattgtaatttttatatttaactt |
4855126 |
T |
|
| Q |
201 |
taatttcagacagtttgatgctg-gaca--tgattttaagctc |
240 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
4855125 |
taatttcagacagtttgatgctgagacatttgattttaagctc |
4855083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5197447 - 5197665
Alignment:
| Q |
1 |
tacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcggtatggcttggttttattacattagtaaatttgcacgtannnnn |
100 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||||| |||||| | |||||||| ||||| |||||||||||||| ||||| ||| |||| |
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| T |
5197447 |
tacataacaatactattggccttcataacagtgttgtgcatcaatccacgttggcgc-atggcctggttttattacatcagtaagtttatgcgtagattc |
5197545 |
T |
|
| Q |
101 |
nnnccaacttttccattgtactgaagagtgtccgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcgt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||| || |||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| | | |
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|
| T |
5197546 |
tttccaacttttccattgtattgaagagtggccatagttcctgttgaaacattatgtggagtctcaaatatttgcatattgtaatttttatatttacctt |
5197645 |
T |
|
| Q |
201 |
taatttcagacagtttgatg |
220 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
5197646 |
taatttcagacaatttgatg |
5197665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5215592 - 5215811
Alignment:
| Q |
1 |
tacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcggtatggcttggttttattacattagtaaatttgcacgtannnnn |
100 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||||| ||||| | |||||||| |||||| |||||||||||||| ||||| ||| |||| |
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|
| T |
5215592 |
tacataacaatactattggccttcataacagtgttgtgcgtcaatccacgttggcg-tatggcctggttttattacatcagtaagtttatgcgtaaaatt |
5215690 |
T |
|
| Q |
101 |
nnnccaacttttccattgtactgaagagtgtccgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcgt |
200 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || | ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| | | |
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| T |
5215691 |
tttccaacgtttccattgtattgaagagtgtctgttattcctgttgaaacttcaagtgaagtctcaaatatttggatattgtaatttttatatttacctt |
5215790 |
T |
|
| Q |
201 |
taatttcagacagtttgatgc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
5215791 |
taatttcagacagtttgatgc |
5215811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 5184054 - 5184264
Alignment:
| Q |
7 |
acaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcggtatggcttggttttattacattagtaaatttgcacgtannnnnnnncca |
106 |
Q |
| |
|
|||||| | ||||||||| |||| |||||| | |||||| | |||||||| |||||| |||||||||||||| ||||| ||| |||| ||| |
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| T |
5184054 |
acaatactattggccttcataactgtgttgggcatcaatccacgttggcg-tatggcctggttttattacatcagtaagtttatgcgtagattctttcca |
5184152 |
T |
|
| Q |
107 |
acttttccattgtactgaagagtgtccgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcgttaattt |
206 |
Q |
| |
|
|||||||||| || ||| |||||||| |||| ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| |||||||| |
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| T |
5184153 |
tcttttccattatattgatgagtgtccatagttcctgttgaaactttatgtggagtctaaaatatttggatactgtattttttatatttaccgttaattc |
5184252 |
T |
|
| Q |
207 |
cagacagtttga |
218 |
Q |
| |
|
|||||||||||| |
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| T |
5184253 |
cagacagtttga |
5184264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 4840816 - 4840618
Alignment:
| Q |
1 |
tacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcggtatggcttggttttattacattagtaaatttgcacgtannnnn |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| |||||| | ||||||| ||||||| |||||||||||||| ||||| ||| |||| |
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|
| T |
4840816 |
tacataacaatattgttagccttcataacagtgttgtgcatcaatccacgttggc-gtatggcctggttttattacatcagtaagtttatgcgtagattt |
4840718 |
T |
|
| Q |
101 |
nnnccaacttttccattgtactgaagagtgtccgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaatttttatatttatcgt |
200 |
Q |
| |
|
||||||||||||||||| | |||||||||| || ||| |||||||| ||||||||| |||||||||||||||||||||||||| |||| | | |
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|
| T |
4840717 |
tttccaacttttccattgtattaaagagtgtccata------gtttaaactttatgtggagtctaaaatatttggatattgtaatttttatctttagctt |
4840624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 5174706 - 5174888
Alignment:
| Q |
1 |
tacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcggtatggcttggttttattacattagtaaatttgcacgtannnnn |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||| |||||| | ||||||| ||||||| ||||||||||| || ||||| ||| |||| |
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|
| T |
5174706 |
tacataacaatattgttggccctcataacagttttgtgcatcaatccacgttggc-gtatggcctggttttattatatcagtaagtttatgcgtagattt |
5174804 |
T |
|
| Q |
101 |
nnnccaacttttccattgtactgaagagtgtccgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaattttta |
190 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
5174805 |
tttccaacttttccattgtattgaagagtgtccata------gtttaaactttatgtggagtctcaaatatttggatattgtaattttta |
5174888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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