View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7711_low_46 (Length: 271)

Name: NF7711_low_46
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7711_low_46
NF7711_low_46
[»] chr2 (3 HSPs)
chr2 (1-168)||(34970872-34971039)
chr2 (166-233)||(34971061-34971128)
chr2 (1-63)||(41454901-41454963)
[»] chr7 (1 HSPs)
chr7 (16-64)||(21978939-21978987)
[»] chr4 (3 HSPs)
chr4 (37-104)||(44203610-44203680)
chr4 (1-63)||(16422387-16422449)
chr4 (26-62)||(46285371-46285407)
[»] chr6 (1 HSPs)
chr6 (17-63)||(22717426-22717472)
[»] chr1 (1 HSPs)
chr1 (1-63)||(12429319-12429381)
[»] chr3 (1 HSPs)
chr3 (39-104)||(4477405-4477470)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 34970872 - 34971039
Alignment:
Q  1 aactataaattttgacttttaaaacttttatcatgatgtttttgttgtgaatcgaagaatttatttccatgttatattatactataacaaaatttataat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34970872 aactataaattttgacttttaaaacttttatcatgatgtttttgttgtgaatcgaagaatttatttccatgttatattatactataacaaaatttataat 34970971  T
Q  101 tttactgattacccacaccttaatttgtaatgacaaaaattccacactcgcaccatacttacctatta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34970972 tttactgattacccacaccttaatttgtaatgacaaaaattccacactcgcaccatacttacctatta 34971039  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 34971061 - 34971128
Alignment:
Q  166 ttataaaacctctttcaaacatttaaaagaaaagagtacaatagtctcatatactccaactctatata 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34971061 ttataaaacctctttcaaacatttaaaagaaaagagtacaatagtctcatatactccaactctatata 34971128  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41454901 - 41454963
Alignment:
Q  1 aactataaattttgacttttaaaacttttatcatgatgtttttgttgtgaatcgaagaattta 63  Q
    |||| ||||||| ||||||| |||||| |||  |||| |||||||||||||||||||||||||    
T  41454901 aactctaaatttcgactttttaaacttctattgtgatttttttgttgtgaatcgaagaattta 41454963  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 21978987 - 21978939
Alignment:
Q  16 cttttaaaacttttatcatgatgtttttgttgtgaatcgaagaatttat 64  Q
    ||||| ||||||||||||||||||||||||||| ||| |||| ||||||    
T  21978987 ctttttaaacttttatcatgatgtttttgttgtaaattgaaggatttat 21978939  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 44203680 - 44203610
Alignment:
Q  37 tgtttttgttgtgaatcgaagaatttat---ttccatgttatattatactataacaaaatttataatttta 104  Q
    |||||||||||| | | |||||||||||   ||||||||||||||||| |||||||||| |||| ||||||    
T  44203680 tgtttttgttgtcagttgaagaatttatctcttccatgttatattatagtataacaaaacttatgatttta 44203610  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16422449 - 16422387
Alignment:
Q  1 aactataaattttgacttttaaaacttttatcatgatgtttttgttgtgaatcgaagaattta 63  Q
    |||| ||||||||||||||| |||||| |||  |||| |||||| || |||||||||||||||    
T  16422449 aactctaaattttgactttttaaacttctattgtgatttttttgctgcgaatcgaagaattta 16422387  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 46285407 - 46285371
Alignment:
Q  26 ttttatcatgatgtttttgttgtgaatcgaagaattt 62  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  46285407 ttttattatgatatttttgttgtgaatcgaagaattt 46285371  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 22717472 - 22717426
Alignment:
Q  17 ttttaaaacttttatcatgatgtttttgttgtgaatcgaagaattta 63  Q
    |||| ||||||||||||||||| ||||| ||||||| ||||||||||    
T  22717472 tttttaaacttttatcatgatgattttgctgtgaattgaagaattta 22717426  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12429319 - 12429381
Alignment:
Q  1 aactataaattttgacttttaaaacttttatcatgatgtttttgttgtgaatcgaagaattta 63  Q
    |||| ||| ||| ||||||| ||||||||||| ||||||||||| ||| ||| ||||||||||    
T  12429319 aactttaattttcgactttttaaacttttatcgtgatgtttttgatgtaaatagaagaattta 12429381  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 4477470 - 4477405
Alignment:
Q  39 tttttgttgtgaatcgaagaattta---tttccatgttatattatactataacaaaatttataatttta 104  Q
    ||||| |||||||||||||||||||   ||| |||||||||||   ||||||||||| |||||||||||    
T  4477470 tttttattgtgaatcgaagaatttaactttttcatgttatatt---ctataacaaaacttataatttta 4477405  T

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