View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_47 (Length: 264)
Name: NF7711_low_47
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 36640666 - 36640896
Alignment:
| Q |
18 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
117 |
Q |
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| T |
36640666 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
36640765 |
T |
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| Q |
118 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
217 |
Q |
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| T |
36640766 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagc--cacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
36640863 |
T |
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| Q |
218 |
acgttttgctaaagcatctgcaaatgagttcat |
250 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36640864 |
acgttttgctaaagcatctgcaaatgagttcat |
36640896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 36633302 - 36633530
Alignment:
| Q |
22 |
cagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttct |
121 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36633302 |
cagcaacacaatcccacctatcagctaaacacaccccaccacaacagcatccgaatcagtcaggacagcagcaaacagacagatatacaaatagatttct |
36633401 |
T |
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| Q |
122 |
ctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgt |
221 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| | |
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| T |
36633402 |
ctatttctgtaaaataaattttgaattgcaaactagcaagcctcacacactttaatccataggccaccaaattctctgcccctccatattcacgccactt |
36633501 |
T |
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| Q |
222 |
tttgctaaagcatctgcaaatgagttcat |
250 |
Q |
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| T |
36633502 |
tttgctaaagcatctgcaaatgagttcat |
36633530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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