View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_48 (Length: 254)
Name: NF7711_low_48
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 2268609 - 2268827
Alignment:
| Q |
17 |
ttctctcacatgtatataattaattggtttttgttgttgcccatatcagctcttatagattcttttctaaaatgagacaagattattacttgtctttgat |
116 |
Q |
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| T |
2268609 |
ttctctcacatgtatataattaattggtttttgttgttgcccatatcagctcttatagattcttttctaaaatgagacaagattattacttgtctttgat |
2268708 |
T |
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| Q |
117 |
acataagttgttatgtggttttattagggcctatagtgtgctgggtattatggtctaaataggtaatatgagaaaaattctttgt-nnnnnnnntatgat |
215 |
Q |
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| T |
2268709 |
acataagttgttatgtggttttattagggcctatagtgtgctgggtattatggtctaaataggtaatctgagaagaattctttgtaaaaaaatatatgat |
2268808 |
T |
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| Q |
216 |
ggcctatagtgtgctgggt |
234 |
Q |
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| T |
2268809 |
ggcctatagtgtgctgggt |
2268827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 2268809 - 2268851
Alignment:
| Q |
144 |
ggcctatagtgtgctgggtattatggtctaaataggtaatatg |
186 |
Q |
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| T |
2268809 |
ggcctatagtgtgctgggtattatggtctaaatgggtattatg |
2268851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 2268865 - 2268899
Alignment:
| Q |
132 |
tggttttattagggcctatagtgtgctgggtatta |
166 |
Q |
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| T |
2268865 |
tggttttatcagggcctatagtgtgctgggtatta |
2268899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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