View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7711_low_5 (Length: 733)

Name: NF7711_low_5
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7711_low_5
NF7711_low_5
[»] chr6 (3 HSPs)
chr6 (16-721)||(1786650-1787361)
chr6 (416-481)||(18860049-18860114)
chr6 (416-475)||(16477086-16477145)
[»] chr4 (42 HSPs)
chr4 (416-487)||(12178908-12178979)
chr4 (416-487)||(12184292-12184363)
chr4 (416-487)||(12189627-12189698)
chr4 (416-487)||(12172438-12172509)
chr4 (416-487)||(12182388-12182459)
chr4 (416-487)||(12189283-12189354)
chr4 (416-485)||(12180473-12180542)
chr4 (416-485)||(12180811-12180880)
chr4 (416-485)||(12182047-12182116)
chr4 (416-479)||(12169474-12169537)
chr4 (416-487)||(12177328-12177399)
chr4 (421-487)||(12169151-12169217)
chr4 (416-487)||(12173104-12173175)
chr4 (416-487)||(12184954-12185025)
chr4 (416-487)||(12185298-12185369)
chr4 (416-487)||(12186603-12186674)
chr4 (416-487)||(12186946-12187017)
chr4 (416-487)||(12187290-12187361)
chr4 (416-487)||(12188597-12188668)
chr4 (419-485)||(12170057-12170123)
chr4 (416-478)||(12188949-12189011)
chr4 (416-485)||(12172765-12172834)
chr4 (416-485)||(12174115-12174184)
chr4 (416-485)||(12174781-12174850)
chr4 (416-485)||(12178567-12178636)
chr4 (416-485)||(12183950-12184019)
chr4 (416-485)||(12184614-12184683)
chr4 (416-487)||(12174454-12174525)
chr4 (416-485)||(12173774-12173843)
chr4 (416-485)||(12179234-12179303)
chr4 (416-477)||(12182722-12182783)
chr4 (417-485)||(12173433-12173501)
chr4 (416-485)||(12175124-12175192)
chr4 (416-487)||(12176985-12177058)
chr4 (419-469)||(12170661-12170711)
chr4 (419-468)||(12169779-12169828)
chr4 (416-474)||(4374979-4375037)
chr4 (419-469)||(12170367-12170417)
chr4 (450-487)||(12185641-12185678)
chr4 (450-487)||(12187633-12187670)
chr4 (450-483)||(17817947-17817980)
chr4 (454-487)||(19156126-19156159)
[»] chr5 (2 HSPs)
chr5 (416-475)||(21825765-21825824)
chr5 (417-476)||(25904730-25904789)
[»] chr2 (51 HSPs)
chr2 (416-475)||(24621693-24621752)
chr2 (416-475)||(24622012-24622071)
chr2 (416-475)||(24622331-24622390)
chr2 (416-475)||(24622615-24622674)
chr2 (416-475)||(24622899-24622958)
chr2 (416-475)||(24623502-24623561)
chr2 (416-475)||(24623821-24623880)
chr2 (416-475)||(24624414-24624473)
chr2 (416-475)||(24624733-24624792)
chr2 (416-475)||(24625017-24625076)
chr2 (416-475)||(24625336-24625395)
chr2 (416-475)||(24626909-24626968)
chr2 (416-475)||(24631395-24631454)
chr2 (416-475)||(24631714-24631773)
chr2 (416-475)||(24631998-24632057)
chr2 (416-475)||(24632282-24632341)
chr2 (416-475)||(24632601-24632660)
chr2 (416-475)||(24632885-24632944)
chr2 (416-475)||(24633169-24633228)
chr2 (416-475)||(24633488-24633547)
chr2 (416-475)||(24633807-24633866)
chr2 (416-475)||(24634091-24634150)
chr2 (416-475)||(24634694-24634753)
chr2 (416-475)||(24638773-24638832)
chr2 (416-475)||(24639092-24639151)
chr2 (416-475)||(24623218-24623277)
chr2 (416-475)||(24627228-24627287)
chr2 (416-475)||(24627512-24627571)
chr2 (416-475)||(24631111-24631170)
chr2 (416-475)||(24625978-24626037)
chr2 (416-475)||(24634410-24634469)
chr2 (416-475)||(24638454-24638513)
chr2 (422-475)||(24626298-24626351)
chr2 (416-475)||(3348060-3348119)
chr2 (422-475)||(24637837-24637890)
chr2 (416-475)||(24619612-24619674)
chr2 (416-475)||(24620760-24620822)
chr2 (416-475)||(24621082-24621145)
chr2 (416-475)||(24621405-24621468)
chr2 (416-475)||(24625655-24625718)
chr2 (416-475)||(24626621-24626684)
chr2 (416-475)||(24635565-24635628)
chr2 (416-475)||(24636266-24636329)
chr2 (416-475)||(24636589-24636652)
chr2 (416-475)||(24637514-24637577)
chr2 (416-475)||(24639441-24639504)
chr2 (416-475)||(24639764-24639827)
chr2 (416-475)||(24640087-24640150)
chr2 (416-475)||(24635242-24635305)
chr2 (416-475)||(24636912-24636975)
chr2 (416-481)||(32352347-32352412)
[»] scaffold1024 (1 HSPs)
scaffold1024 (416-475)||(53-112)
[»] chr3 (3 HSPs)
chr3 (416-475)||(14903158-14903217)
chr3 (416-467)||(16990093-16990144)
chr3 (422-471)||(30729418-30729467)
[»] chr1 (2 HSPs)
chr1 (417-471)||(2557895-2557949)
chr1 (438-473)||(12891610-12891645)
[»] chr7 (2 HSPs)
chr7 (434-486)||(42435297-42435349)
chr7 (431-474)||(19426010-19426053)
[»] chr8 (3 HSPs)
chr8 (448-479)||(38580338-38580369)
chr8 (423-487)||(13642504-13642566)
chr8 (416-473)||(24724671-24724728)


Alignment Details
Target: chr6 (Bit Score: 533; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 16 - 721
Target Start/End: Complemental strand, 1787361 - 1786650
Alignment:
Q  16 acatcagtctattttctttgtatctatacaaactagatttactacgctcaacaaaagtacgcagtcacgcattcaggataatcttgatt---cgatcaag 112  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  1787361 acatcactctattttctttgtatctatacaaactagatttattacggtcaacaaaagtacgcagtcacgcattcaggataatcttgattgttcgatcaag 1787262  T
Q  113 atgaccattcaattaagattagacgatttccgatatcagactatgtgaatgtgggttc-tcctaattgcaggaaccctagtcttgtgtggtcacaaacat 211  Q
    ||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  1787261 atgaccattcaatcaagatcagacgattcccaatatcagactacgtgaatgtgggttcctcctaattgcaggaaccctagtcttgtatggtcacaaacat 1787162  T
Q  212 ttagatacaccatttagtcacatatacaagtcttatgtggtcacaaacattttgatacatacaccatttaatcacaaatacatatttgaaaaagttataa 311  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1787161 ttagatacatcatttagtcacatatacaagtcttatgtggtcacaaacattttgatacatacaccatttaatcacaaatacatatttgaaaaagttataa 1787062  T
Q  312 aaaataaaagaattgaataaagtacannnnnnnaggaaagaaaaatatagttacacctaagtattttccgaatatattgtctttacatttttaattcaaa 411  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1787061 aaaataaaagaattgaataaagtacatttttttaggaaagaaaaatatagttatacctaagtattttccgaatatattgtctttacatttttaattcaaa 1786962  T
Q  412 ctaacttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccaccctttttgtaaccnnnnnnnctaacacaaga 511  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||       |||||||||||    
T  1786961 ctaacttggacgagagtagtattaggatgggtgaccttctggtaagtctttgtgttgcacctctcccaccctttgtgtaaccaaaaaaactaacacaaga 1786862  T
Q  512 cttcttttaccacaattattaatctacatgtcatgttgtaccaaaaccgcaaatta--atatatgtttcgattactagtgaatttgacaaaattacggta 609  Q
    || |||||||||||||||||||||||| |||||||| |||||||||||  ||||||  |||||||||||||||||||||||||||||||||||| || ||    
T  1786861 ctccttttaccacaattattaatctacgtgtcatgtcgtaccaaaaccaaaaattagtatatatgtttcgattactagtgaatttgacaaaatttcgata 1786762  T
Q  610 tcacatttttaacaaaatcacggtgtcatcatataattctgtcaactttatggcaattctaagcattatactcaatgtgtttaagatgttaataaagatt 709  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  1786761 tcacaattttaacaaaatcaaggtgtcatcatataattctgtcaactttatggcaattctaagcattgtactcaatttgtttaagatgttaataaagatt 1786662  T
Q  710 gaccttgatgtc 721  Q
    ||||||||||||    
T  1786661 gaccttgatgtc 1786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 416 - 481
Target Start/End: Original strand, 18860049 - 18860114
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacc 481  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  18860049 cttgggcgagagtagtactaggatgggtgacctcctggaaagtccttgtgttgcacctctcccacc 18860114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 16477145 - 16477086
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  16477145 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 16477086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12178979 - 12178908
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12178979 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12178908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12184363 - 12184292
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12184363 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12184292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12189698 - 12189627
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12189698 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12189627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12172509 - 12172438
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  12172509 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtattgcacctctcccaccgttttt 12172438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12182459 - 12182388
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  12182459 cttgggcgagagtaggactaggatgggtgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12182388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12189354 - 12189283
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  12189354 cttgggcgagagtagtactaggatggatgacctcctgggaagtccttgtgttgcacctctcccaccattttt 12189283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12180542 - 12180473
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  12180542 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgtttaacctctcccacccttt 12180473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12180880 - 12180811
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  12180880 cttgggcgagagtagtactaggatgggtgacctcctggaaagtccttgtgttgcacctctcccacgcttt 12180811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12182116 - 12182047
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  12182116 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgtttaacctctcccacccttt 12182047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 479
Target Start/End: Complemental strand, 12169537 - 12169474
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctccca 479  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||    
T  12169537 cttgggcgagagtagttctaggatgggtgaccttttgggaagtccttgtgttgcacctctccca 12169474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12177399 - 12177328
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||| |||||    
T  12177399 cttgggcgagagtagtactaggatgggtgaccacctgggaagtccttgtattgcacctctcccaccattttt 12177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 421 - 487
Target Start/End: Complemental strand, 12169217 - 12169151
Alignment:
Q  421 gcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  12169217 gcgagagtagtactaggatgggtgacctcctgggaagtccttgtattgcacctctcccacctttttt 12169151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12173175 - 12173104
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||| |||||| ||||||||| |||||    
T  12173175 cttgggcgagagtagtactaggatgggtgacctcctaggaagtccttgtattgcacatctcccaccattttt 12173104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12185025 - 12184954
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||| ||| |||||| |||||| |||||||||||||||||| |||||    
T  12185025 cttgggcgagagtagtactaggatgggtggcctcctgggaggtccttttgttgcacctctcccaccattttt 12184954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12185369 - 12185298
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    |||||||||||||||||  |||||||||| ||| || ||||||||||||||||||||||||||||| |||||    
T  12185369 cttgggcgagagtagtacaaggatgggtgtcctcctaggaagtccttgtgttgcacctctcccaccattttt 12185298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12186674 - 12186603
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    |||||||||||||||||  |||||||||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  12186674 cttgggcgagagtagtacgaggatgggtgtcctcctgagaagtccttgtgttgcacctctcccaccattttt 12186603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12187017 - 12186946
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||| ||| |||||| |||||| |||||||||||||||||| |||||    
T  12187017 cttgggcgagagtagtactaggatgggtggcctcctgggaggtccttttgttgcacctctcccaccattttt 12186946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12187361 - 12187290
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    |||||||||||||||||  |||||||||| ||| || ||||||||||||||||||||||||||||| |||||    
T  12187361 cttgggcgagagtagtacaaggatgggtgtcctcctaggaagtccttgtgttgcacctctcccaccattttt 12187290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12188668 - 12188597
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    |||||||||||||||||  |||||||||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  12188668 cttgggcgagagtagtacgaggatgggtgtcctcctgagaagtccttgtgttgcacctctcccaccattttt 12188597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 419 - 485
Target Start/End: Complemental strand, 12170123 - 12170057
Alignment:
Q  419 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  12170123 gggcgagagtagtactatgatgggtgacctcttgggaagtccttgtgttgcacctctcccatccttt 12170057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 478
Target Start/End: Complemental strand, 12189011 - 12188949
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctccc 478  Q
    ||||||||||||||||  ||||||||||||||| ||||||||| |||||||||||||||||||    
T  12189011 cttgggcgagagtagttctaggatgggtgacctcctgggaagttcttgtgttgcacctctccc 12188949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12172834 - 12172765
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||||||||||||||| |||||||| |||||| ||||| ||||||||| ||| ||||||||||||||||    
T  12172834 cttgggcgagagtagtactaggatggatgacctcctgggtagtccttgtattgaacctctcccacccttt 12172765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12174184 - 12174115
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||||||||||||||| |||||||| |||||| |||| |||||||||||||  ||||||||||||||||    
T  12174184 cttgggcgagagtagtactaggatggatgacctcctggaaagtccttgtgtttaacctctcccacccttt 12174115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12174850 - 12174781
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||||||||||||||| |||||||| ||| || ||||| ||||||||||||| ||||||||||||||||    
T  12174850 cttgggcgagagtagtactaggatggatgatctcctgggtagtccttgtgttgaacctctcccacccttt 12174781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12178636 - 12178567
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||||||||||||||| || |||||||| ||| ||||||||||||||||||  ||||||||||||||||    
T  12178636 cttgggcgagagtagtactatgatgggtgtcctcctgggaagtccttgtgtttaacctctcccacccttt 12178567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12184019 - 12183950
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||| ||||||||||| ||||||||||||||| || |||||||||||||||  ||||||||||||||||    
T  12184019 cttggacgagagtagtactaggatgggtgacctccttggaagtccttgtgtttaacctctcccacccttt 12183950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12184683 - 12184614
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    |||||||||||||||||  |||||||||||||| |||| |||||||||||||||||||||| ||| ||||    
T  12184683 cttgggcgagagtagtaccaggatgggtgacctcctggaaagtccttgtgttgcacctctctcacgcttt 12184614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12174525 - 12174454
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| ||||||||||||| | || |||||||||||| |||||| ||||||||| |||||    
T  12174525 cttgggcgagagtagtactaggatgggtgacgtcctaggaagtccttgtattgcacatctcccaccattttt 12174454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12173843 - 12173774
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    |||||||| |||||||| |||||||| |||||| |||| |||||||||||||  ||||||||||||||||    
T  12173843 cttgggcgggagtagtactaggatggatgacctcctggaaagtccttgtgtttaacctctcccacccttt 12173774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12179303 - 12179234
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    ||||||||||||||||| |  ||||| |||||| ||||||||||||||||||| ||||||||||| ||||    
T  12179303 cttgggcgagagtagtactttgatggatgacctcctgggaagtccttgtgttgaacctctcccacgcttt 12179234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 12182783 - 12182722
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcc 477  Q
    ||||||||||||||||| | |||||| |||||| ||||||||||||||||||| ||||||||    
T  12182783 cttgggcgagagtagtacttggatggatgacctcctgggaagtccttgtgttgaacctctcc 12182722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 12173501 - 12173433
Alignment:
Q  417 ttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    |||||||||||||||| |||||||| ||| || ||||| |||||||||| || ||||||||||||||||    
T  12173501 ttgggcgagagtagtactaggatggatgatctcctgggtagtccttgtgctgaacctctcccacccttt 12173433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 485
Target Start/End: Complemental strand, 12175192 - 12175124
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttt 485  Q
    |||||||| |||||||| |||||||| |||| | ||||||||||||||||||  ||||||||||||||||    
T  12175192 cttgggcgggagtagtactaggatggatgac-tcctgggaagtccttgtgtttaacctctcccacccttt 12175124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 416 - 487
Target Start/End: Complemental strand, 12177058 - 12176985
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttct---gggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||| ||||||||||| ||||||||||||||| ||   ||||||||||| |||||||||||||||||| |||||    
T  12177058 cttggacgagagtagtactaggatgggtgacct-ctagggggaagtccttttgttgcacctctcccaccattttt 12176985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 469
Target Start/End: Complemental strand, 12170711 - 12170661
Alignment:
Q  419 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgc 469  Q
    |||||||||||||| || |||||||||||| |||||||||| |||||||||    
T  12170711 gggcgagagtagtactatgatgggtgacctcctgggaagtcattgtgttgc 12170661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 468
Target Start/End: Complemental strand, 12169828 - 12169779
Alignment:
Q  419 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttg 468  Q
    |||||||||||||| || |||||||||||| |||||||||| ||||||||    
T  12169828 gggcgagagtagtactatgatgggtgacctcctgggaagtcattgtgttg 12169779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 416 - 474
Target Start/End: Complemental strand, 4375037 - 4374979
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctc 474  Q
    |||| |||||||||||| ||||||| ||||| | || |||| |||||||||||||||||    
T  4375037 cttgtgcgagagtagtaataggatgtgtgacttcctaggaaatccttgtgttgcacctc 4374979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 469
Target Start/End: Complemental strand, 12170417 - 12170367
Alignment:
Q  419 gggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgc 469  Q
    |||||||||||||| || |||||||||||| || ||||||| |||||||||    
T  12170417 gggcgagagtagtactatgatgggtgacctcctaggaagtcattgtgttgc 12170367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 12185678 - 12185641
Alignment:
Q  450 ctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  12185678 ctgggaagtccttgtgtcgcacctctcccaccattttt 12185641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 12187670 - 12187633
Alignment:
Q  450 ctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  12187670 ctgggaagtccttgtgtcgcacctctcccaccattttt 12187633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 483
Target Start/End: Original strand, 17817947 - 17817980
Alignment:
Q  450 ctgggaagtccttgtgttgcacctctcccaccct 483  Q
    |||||||||||||||||||||||| |||||||||    
T  17817947 ctgggaagtccttgtgttgcacctatcccaccct 17817980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 487
Target Start/End: Complemental strand, 19156159 - 19156126
Alignment:
Q  454 gaagtccttgtgttgcacctctcccacccttttt 487  Q
    |||||||||||||||||||||||||||| |||||    
T  19156159 gaagtccttgtgttgcacctctcccaccattttt 19156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Original strand, 21825765 - 21825824
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  21825765 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 21825824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 25904789 - 25904730
Alignment:
Q  417 ttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctc 476  Q
    |||| |||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||    
T  25904789 ttggacgagagtagtattaagatggatgaccttttggaaagtccttgtgttgcacctctc 25904730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 51)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24621752 - 24621693
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24621752 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24621693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24622071 - 24622012
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24622071 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24622012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24622390 - 24622331
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24622390 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24622331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24622674 - 24622615
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24622674 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24622615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24622958 - 24622899
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24622958 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24622899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24623561 - 24623502
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24623561 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24623502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24623880 - 24623821
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24623880 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24623821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24624473 - 24624414
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24624473 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24624414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24624792 - 24624733
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24624792 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24624733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24625076 - 24625017
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24625076 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24625017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24625395 - 24625336
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24625395 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24625336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24626968 - 24626909
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24626968 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24626909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24631454 - 24631395
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24631454 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24631395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24631773 - 24631714
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24631773 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24631714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24632057 - 24631998
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24632057 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24631998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24632341 - 24632282
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24632341 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24632282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24632660 - 24632601
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24632660 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24632601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24632944 - 24632885
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24632944 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24632885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24633228 - 24633169
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24633228 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24633169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24633547 - 24633488
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24633547 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24633488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24633866 - 24633807
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24633866 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24633807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24634150 - 24634091
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24634150 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24634091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24634753 - 24634694
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24634753 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24634694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24638832 - 24638773
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24638832 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24638773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24639151 - 24639092
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24639151 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24639092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24623277 - 24623218
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  24623277 cttgggcgagagtagtnctaggatgggtgacctcctgggaagtccttgtgttgcacctct 24623218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24627287 - 24627228
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  24627287 cttgggcgagagtagtnctaggatgggtgacctcctgggaagtccttgtgttgcacctct 24627228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24627571 - 24627512
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||    
T  24627571 cttgggcgagagtagtactaggatgggtgacctcctgggaagtcnttgtgttgcacctct 24627512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24631170 - 24631111
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  24631170 cttgggcgagagtagtactaggatgggtgacctcntgggaagtccttgtgttgcacctct 24631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24626037 - 24625978
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  24626037 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccttgttttgcacctct 24625978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24634469 - 24634410
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  24634469 cttgggcgagagtagtgctaggatgggtgacctcctgggaagtccttgtgttgcacctct 24634410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24638513 - 24638454
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  24638513 cttgggcgagagtagtgctaggatgggtgacctcctgggaagtccttgtgttgcacctct 24638454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 24626351 - 24626298
Alignment:
Q  422 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  24626351 cgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcacctct 24626298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 3348119 - 3348060
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||| ||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  3348119 cttggacgagagtagtactaggatgggtgacctcctaggaagtccttgtgttgcacctct 3348060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 24637890 - 24637837
Alignment:
Q  422 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  24637890 cgagagtagtactaggatgggtgacctcctgggaagtccttgttttgcacctct 24637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24619674 - 24619612
Alignment:
Q  416 cttgggcgagagtagtattag---gatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||||||    
T  24619674 cttgggcgagagtagtactagntggatgggtgacctcctgggaagtccttgtgttgcacctct 24619612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24620822 - 24620760
Alignment:
Q  416 cttgggcgagagtagtattag---gatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||||||    
T  24620822 cttgggcgagagtagtactagntggatgggtgacctcctgggaagtccttgtgttgcacctct 24620760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24621145 - 24621082
Alignment:
Q  416 cttgggcgagagtagtattaggatgg----gtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||    ||||||| ||||||||||||||||||||||||||    
T  24621145 cttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24621082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24621468 - 24621405
Alignment:
Q  416 cttgggcgagagtagtattagg----atgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||    ||||||||||| ||||||||||||||||||||||||||    
T  24621468 cttgggcgagagtagtactaggnnggatgggtgacctcctgggaagtccttgtgttgcacctct 24621405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24625718 - 24625655
Alignment:
Q  416 cttgggcgagagtagtattagg----atgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||    ||||||||||| ||||||||||||||||||||||||||    
T  24625718 cttgggcgagagtagtactaggntggatgggtgacctcctgggaagtccttgtgttgcacctct 24625655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24626684 - 24626621
Alignment:
Q  416 cttgggcgagagtagta----ttaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    |||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||||    
T  24626684 cttgggcgagagtagtactaggtaggatgggtgacctcctgggaagtccttgtgttgcacctct 24626621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24635628 - 24635565
Alignment:
Q  416 cttgggcgagagtagtattaggatgg----gtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||    ||||||| ||||||||||||||||||||||||||    
T  24635628 cttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24635565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24636329 - 24636266
Alignment:
Q  416 cttgggcgagagtagtattaggatgg----gtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||    ||||||| ||||||||||||||||||||||||||    
T  24636329 cttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24636266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24636652 - 24636589
Alignment:
Q  416 cttgggcgagagtagtattaggatgg----gtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||    ||||||| ||||||||||||||||||||||||||    
T  24636652 cttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24636589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24637577 - 24637514
Alignment:
Q  416 cttgggcgagagtagta----ttaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    |||||||||||||||||     ||||||||||||||| ||||||||||||||||||||||||||    
T  24637577 cttgggcgagagtagtactaggtaggatgggtgacctcctgggaagtccttgtgttgcacctct 24637514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24639504 - 24639441
Alignment:
Q  416 cttgggcgagagtagtattaggatgg----gtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||    ||||||| ||||||||||||||||||||||||||    
T  24639504 cttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24639441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24639827 - 24639764
Alignment:
Q  416 cttgggcgagagtagtattagg----atgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||    ||||||||||| ||||||||||||||||||||||||||    
T  24639827 cttgggcgagagtagtactaggnnggatgggtgacctcctgggaagtccttgtgttgcacctct 24639764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24640150 - 24640087
Alignment:
Q  416 cttgggcgagagtagtattaggatgg----gtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||    ||||||| ||||||||||||||||||||||||||    
T  24640150 cttgggcgagagtagtactaggatggatgggtgacctcctgggaagtccttgtgttgcacctct 24640087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24635305 - 24635242
Alignment:
Q  416 cttgggcgagagtagtattaggatgg----gtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||    ||||||| | ||||||||||||||||||||||||    
T  24635305 cttgggcgagagtagtactaggatggatgggtgacctccngggaagtccttgtgttgcacctct 24635242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 24636975 - 24636912
Alignment:
Q  416 cttgggcgagagtagtattaggatgg----gtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||    ||||||| | ||||||||||||||||||||||||    
T  24636975 cttgggcgagagtagtactaggatggatgggtgacctccagggaagtccttgtgttgcacctct 24636912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 481
Target Start/End: Original strand, 32352347 - 32352412
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacc 481  Q
    ||||| ||| ||| |||||||||||||||||||| |   ||||| |||||||||||||||| ||||    
T  32352347 cttggacgaaagtggtattaggatgggtgaccttttaaaaagtctttgtgttgcacctctctcacc 32352412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 416 - 475
Target Start/End: Original strand, 53 - 112
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  53 cttgggcgagagtagtactaggatgggtgacctcctgggaagtccgtgtgttgcacctct 112  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Original strand, 14903158 - 14903217
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctct 475  Q
    ||||||||||||||||| ||||||||||||||| |||  |||||||||||||||||||||    
T  14903158 cttgggcgagagtagtactaggatgggtgacctcctgaaaagtccttgtgttgcacctct 14903217  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 16990093 - 16990144
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgtt 467  Q
    ||||||||||||||||| ||||||| |||||||  |||||||||||||||||    
T  16990093 cttgggcgagagtagtactaggatgagtgacctattgggaagtccttgtgtt 16990144  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 471
Target Start/End: Complemental strand, 30729467 - 30729418
Alignment:
Q  422 cgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcac 471  Q
    ||||||||| |||||||||||||||||||||  ||||| |||||||||||    
T  30729467 cgagagtagcattaggatgggtgaccttctgaaaagtcattgtgttgcac 30729418  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 2557895 - 2557949
Alignment:
Q  417 ttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcac 471  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  2557895 ttggccgagagtagtactaggatgggtgacctcctgggaagtccttgtgttgcac 2557949  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 438 - 473
Target Start/End: Complemental strand, 12891645 - 12891610
Alignment:
Q  438 atgggtgaccttctgggaagtccttgtgttgcacct 473  Q
    ||||||||||||||||||||||||||||||||||||    
T  12891645 atgggtgaccttctgggaagtccttgtgttgcacct 12891610  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 42435349 - 42435297
Alignment:
Q  434 taggatgggtgaccttctgggaagtccttgtgttgcacctctcccaccctttt 486  Q
    ||||||| ||||| || |||||| |||||||||||||||||||||||| ||||    
T  42435349 taggatgagtgacgttatgggaaatccttgtgttgcacctctcccaccatttt 42435297  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 474
Target Start/End: Complemental strand, 19426053 - 19426010
Alignment:
Q  431 tattaggatgggtgaccttctgggaagtccttgtgttgcacctc 474  Q
    ||||||||||||||||||||||| || |||||| ||||||||||    
T  19426053 tattaggatgggtgaccttctggaaaatccttgcgttgcacctc 19426010  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 479
Target Start/End: Complemental strand, 38580369 - 38580338
Alignment:
Q  448 ttctgggaagtccttgtgttgcacctctccca 479  Q
    ||||||||||||||||||||||||||||||||    
T  38580369 ttctgggaagtccttgtgttgcacctctccca 38580338  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 487
Target Start/End: Original strand, 13642504 - 13642566
Alignment:
Q  423 gagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacctctcccacccttttt 487  Q
    |||||||||| || ||||||||||||  |||||| |||||||||||||  ||| |||||||||||    
T  13642504 gagagtagtactaagatgggtgacctcatgggaaatccttgtgttgca--tcttccacccttttt 13642566  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 473
Target Start/End: Complemental strand, 24724728 - 24724671
Alignment:
Q  416 cttgggcgagagtagtattaggatgggtgaccttctgggaagtccttgtgttgcacct 473  Q
    |||||||||||||| |||||| | |||| ||||  ||| |||||||||||||||||||    
T  24724728 cttgggcgagagtaatattagaacgggtaacctcgtggaaagtccttgtgttgcacct 24724671  T

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