View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_51 (Length: 250)
Name: NF7711_low_51
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_51 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 29259079 - 29258835
Alignment:
| Q |
9 |
gagaagaatccagtctgaagatagcaacattgggatgagtttaatatcttttggcctcttgaaaagttctcaagacattgttttgattccccaacaagtt |
108 |
Q |
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| T |
29259079 |
gagatgaatccagtctgaagatagcaacattgggatgagtttaatatcttttggcctcttgaaaagttctcaagacattgttttgattccccaacaagtt |
29258980 |
T |
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| Q |
109 |
tccttaagggatcaacatgtttgcaagagtactagttttatcgattaggacggaccttc----ttagacttaggcttcactagtgtcccaattgatttgt |
204 |
Q |
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| T |
29258979 |
tccttaagggatcaacatgtttgcaagagtactagttttatcgattaggacagaccttcttaattagacttaggcttcactagtgtcccaattgatttgt |
29258880 |
T |
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| Q |
205 |
gtaatttgaatcagaaaatgatagaagattattggagcatagtgtc |
250 |
Q |
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| T |
29258879 |
gtaatttgaatcagaaaatgatag-agattattggagcatagtgtc |
29258835 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 29266979 - 29266887
Alignment:
| Q |
62 |
gcctcttgaaaagttctcaagacattgttttgattccccaacaagtttccttaagggatca-acatgtttgcaagagtactagttttatcgat |
153 |
Q |
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| T |
29266979 |
gcctcttgaaaagttttgaagacatggttttgattccccaataagtttcattgagtgataatacatgtttgcaagagtactagtgttatcgat |
29266887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 2376915 - 2376734
Alignment:
| Q |
62 |
gcctcttgaaaagttctcaagacattgttttgattccccaacaagtttccttaagggatcaacatgtttgcaagagtactagttttatcga--ttaggac |
159 |
Q |
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| T |
2376915 |
gcctcttgaacagctttaaagacatggttttgattcccaaacaagttaccttgagtgatcaacatgtttgcaagagtactagtgttatcgattttcggac |
2376816 |
T |
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| Q |
160 |
ggaccttcttagacttaggcttcactagtgtcccaattgatttgtgtaatttgaatcagaaaatgatagaagattattggagca |
243 |
Q |
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| T |
2376815 |
acaccatctcagacttaggcttcaata--gtcccaactgatttgtgtaattcaaatcagcaaatgaaagaagattattagagca |
2376734 |
T |
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