View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7711_low_53 (Length: 243)
Name: NF7711_low_53
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_53 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 837344 - 837101
Alignment:
| Q |
18 |
gaaaaagtgatggaaaaagaccaaaagtgctttgtttggaagctataatagtgaacattagcatttgaaatgtgctaccatggaccttcaatgtagtatt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
837344 |
gaaaaagtgatagaaaaagaccaaaagtgcttattttggaagctataatagtgaacattagcatttgaaatgtgctaccatggacctttaatgtagtatt |
837245 |
T |
|
| Q |
118 |
gtattgattt-----------------caactaaggaattatgaaaatgcattttctttgttcatttatttgagctgaagg-nnnnnnncaaagtcttaa |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
837244 |
gtattgatttcaacaaatgtgttcattcaactaaggaattatgagaatgcattttctttgttcatttatttgagctgaaggaaataaaacatagtcttaa |
837145 |
T |
|
| Q |
200 |
tttattagaatttatcttggcttgacatagtatagtagtatact |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
837144 |
tttattagaatttatcttggcttgacatagtatagtagtatact |
837101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 819211 - 819153
Alignment:
| Q |
18 |
gaaaaagtgatggaaaaagaccaaaagtgctttgtttggaagctataatagtgaacattag |
78 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||| |
|
|
| T |
819211 |
gaaaaagtgatggaaaaagaccaa--gtgcttttttcggaagctatagtagtgaacattag |
819153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University