View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_62 (Length: 228)
Name: NF7711_low_62
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_62 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32598480 - 32598252
Alignment:
| Q |
1 |
tcatatttcatgcttgttcttctgttttccactttagtgcacttaatatctagcatgtatttatcatctttggtgttgaatacataatannnnnnnnaaa |
100 |
Q |
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| T |
32598480 |
tcatatttcatgcttattgttctgtttcctactttaatgcacttaatatctagcatgtatttaccattttttgtgttgaatacataatattttttttaaa |
32598381 |
T |
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| Q |
101 |
aa-taaaacgtgatagatattaagtattcaacagaaaagatggtaataaagccccgttgatctcatacctaagtaacaacctaattttgggtagagatat |
199 |
Q |
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| T |
32598380 |
aaataaaacgtgatagatattaagtattcaacacaaaagatggtaataaagcccatttgatctcatacctaagtaacaacctaattttgggtggagatat |
32598281 |
T |
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| Q |
200 |
tgaatgaataattttggacatatgttctt |
228 |
Q |
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| T |
32598280 |
tgaatgaataattttggacatatgttctt |
32598252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 32603517 - 32603403
Alignment:
| Q |
113 |
tagatattaagtattcaacagaaaagatggtaataaagccccgttgatctcatacctaagtaacaacctaattttgggtagagatattgaatgaataatt |
212 |
Q |
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| T |
32603517 |
tagatattaagtattcattacaaaagatggtaatgaagcccacagg-tctcatgcccaagtaacaacctaattttgggtagatatattgaatgaataatt |
32603419 |
T |
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| Q |
213 |
ttggacatatgttctt |
228 |
Q |
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| T |
32603418 |
taggacatatgttctt |
32603403 |
T |
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