View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7711_low_64 (Length: 221)

Name: NF7711_low_64
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7711_low_64
NF7711_low_64
[»] chr3 (21 HSPs)
chr3 (1-209)||(2748646-2748854)
chr3 (6-196)||(2797022-2797212)
chr3 (6-196)||(5412568-5412758)
chr3 (6-209)||(2768717-2768920)
chr3 (9-196)||(2856100-2856287)
chr3 (36-199)||(2838920-2839080)
chr3 (21-209)||(2790006-2790203)
chr3 (119-196)||(2755705-2755782)
chr3 (36-193)||(2758878-2759035)
chr3 (9-196)||(2818218-2818405)
chr3 (23-209)||(2806909-2807104)
chr3 (129-199)||(3200611-3200681)
chr3 (129-199)||(3357767-3357837)
chr3 (131-185)||(3221871-3221925)
chr3 (131-185)||(3280653-3280707)
chr3 (129-175)||(22632632-22632678)
chr3 (129-175)||(22636273-22636319)
chr3 (126-185)||(21936799-21936858)
chr3 (129-175)||(22358772-22358818)
chr3 (126-175)||(22459223-22459272)
chr3 (126-175)||(22482204-22482253)
[»] scaffold0691 (1 HSPs)
scaffold0691 (9-209)||(6442-6642)
[»] chr1 (1 HSPs)
chr1 (131-185)||(49386835-49386889)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 2748854 - 2748646
Alignment:
Q  1 ataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2748854 ataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccgcatctaggagg 2748755  T
Q  101 attggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtta 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748754 attggccctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtta 2748655  T
Q  201 gtctctgct 209  Q
    || ||||||    
T  2748654 gtgtctgct 2748646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 2797212 - 2797022
Alignment:
Q  6 ttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattgg 105  Q
    ||||||| || ||| ||||||||||| || ||| ||| |||||| ||||||||| | ||||||||||||| |||||||||||| ||||  ||||||| ||    
T  2797212 ttaatgttcttaatctcagatgctatctggtgaagggaaatcaatgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggatagg 2797113  T
Q  106 tcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc 196  Q
     ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2797112 ccctatgcatcagctgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagatgcttcacccaagttcttattccatc 2797022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 196
Target Start/End: Complemental strand, 5412758 - 5412568
Alignment:
Q  6 ttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattgg 105  Q
    |||||||||||||| ||||||||||| |||||| |||||||||||||||||||    ||||||||||||| |||||||||||  |||| | ||||||||     
T  5412758 ttaatgtcctgaatctcagatgctatctgatgatggggaatcaaagttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattga 5412659  T
Q  106 tcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc 196  Q
     |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  5412658 ccctatgcattagccgatggtattcgtcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccatc 5412568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 2768920 - 2768717
Alignment:
Q  6 ttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattgg 105  Q
    |||||||||||||| ||  |||| || | |||||||||| |||||||||||||| | ||||||||||||  || ||||||||| | ||| ||| ||||||    
T  2768920 ttaatgtcctgaatctctaatgcaattttatgacggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattgg 2768821  T
Q  106 tcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtctc 205  Q
     ||||||  | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  2768820 ccctatgggtcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttggtgtc 2768721  T
Q  206 tgct 209  Q
    ||||    
T  2768720 tgct 2768717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 2856100 - 2856287
Alignment:
Q  9 atgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcc 108  Q
    ||||||||||| || ||||| || | |||| |||||||||||||||||||| | |||| || ||||  |||||||||||||| || | ||||||||| ||    
T  2856100 atgtcctgaatctctgatgcaattttatgatggggaatcaaagttttgattcggcttgtaaccttgttgactaaagatccacgtccatgaggattggccc 2856199  T
Q  109 tatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc 196  Q
    |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2856200 tatgtatcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc 2856287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 2838920 - 2839080
Alignment:
Q  36 tgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaa 135  Q
    ||||||||||||||||||||||||  ||||| | || |||    ||||||||  |||| ||||||||||| |||||||||||| ||||||||||||||||    
T  2838920 tgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaaggtattcatcaa 2839016  T
Q  136 tgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2839017 tgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt 2839080  T

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Target: chr3; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 2790203 - 2790006
Alignment:
Q  21 tcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccac---atctaggaggattggt------cctat 111  Q
    ||||||||||| |||||| |||||||||||||||||||| | ||||||||||||| || |||||||  ||   ||| || ||||||||       |||||    
T  2790203 tcagatgctatctgatgatggggaatcaaagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctat 2790104  T
Q  112 gcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtctctgct 209  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  2790103 gcatgagccgaaggtattcatcgatgatatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcattggtgtctgct 2790006  T

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Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 2755782 - 2755705
Alignment:
Q  119 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  2755782 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccaagttcttattccatc 2755705  T

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Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 2759035 - 2758878
Alignment:
Q  36 tgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaa 135  Q
    |||||||||||||||||||||||| | |||| |||||||  || || |||||| |  | ||||||||||| | |||| || |||||||||||||| ||||    
T  2759035 tgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaa 2758936  T
Q  136 tgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattcc 193  Q
    | | ||||||||||||||| |||||||||||||  ||||||||||| |||||||||||    
T  2758935 ttatatcttcaatgcgaaacgatgcttctctcatatgcttcacccatgttcttattcc 2758878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 2818405 - 2818218
Alignment:
Q  9 atgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcc 108  Q
    ||||||||||| || ||||| || | || ||||||| ||||||| || |||   |||| ||||||||  || |||||||  ||||  |||| ||||||||    
T  2818405 atgtcctgaatctctgatgcaatttcataacggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattggtcc 2818306  T
Q  109 tatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatc 196  Q
    |||| || |   |||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||| ||||||||||||||    
T  2818305 tatggatcaaaagaaggtattcatcaatgacatcttcaatgcgaaatgatgcatctctcacttgcttcacccatgttcttattccatc 2818218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 2807104 - 2806909
Alignment:
Q  23 agatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccac---atctaggaggattggt------cctatgc 113  Q
    |||||||||||||||||||||||||||||||||||   | ||||||||||||  || | |||||||||   ||| ||||||| |||       | |||||    
T  2807104 agatgctatatgatgacggggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgc 2807005  T
Q  114 attagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtctctgct 209  Q
    || |||||| |||||||||| |||| |||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| || || ||||||    
T  2807004 atcagccgatggtattcatcgatgatatcttcaatgcgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcatttgtgtctgct 2806909  T

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Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 3200681 - 3200611
Alignment:
Q  129 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt 199  Q
    |||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| | ||||| |||||    
T  3200681 tcatcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgtt 3200611  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 3357767 - 3357837
Alignment:
Q  129 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt 199  Q
    |||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| | ||||| |||||    
T  3357767 tcatcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcgtt 3357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 3221871 - 3221925
Alignment:
Q  131 atcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt 185  Q
    |||||| |||||||| ||| |||| ||||||||||| ||||||||||||||||||    
T  3221871 atcaatcacatcttctatgtgaaaagatgcttctcttagctgcttcacccaagtt 3221925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 3280653 - 3280707
Alignment:
Q  131 atcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt 185  Q
    |||||| |||||||| || ||||| ||||||||||| ||||||||||||||||||    
T  3280653 atcaatcacatcttctatacgaaaagatgcttctcttagctgcttcacccaagtt 3280707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 22632632 - 22632678
Alignment:
Q  129 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 175  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  22632632 tcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgctt 22632678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 22636273 - 22636319
Alignment:
Q  129 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 175  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||||    
T  22636273 tcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgctt 22636319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 21936858 - 21936799
Alignment:
Q  126 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt 185  Q
    ||||||||||||| |||||| |||| ||| | |||||| || ||||||||||||||||||    
T  21936858 tattcatcaatgatatcttctatgcaaaaagctgcttccctaagctgcttcacccaagtt 21936799  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 22358772 - 22358818
Alignment:
Q  129 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 175  Q
    ||||||||||||||||| ||| |||| ||||||||| ||||||||||    
T  22358772 tcatcaatgacatcttctatgtgaaaagatgcttctatcagctgctt 22358818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 22459223 - 22459272
Alignment:
Q  126 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 175  Q
    ||||||||||||||||||| ||||| ||| ||||||||| | ||||||||    
T  22459223 tattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgctt 22459272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 22482204 - 22482253
Alignment:
Q  126 tattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgctt 175  Q
    ||||||||||||||||||| ||||| ||| ||||||||| | ||||||||    
T  22482204 tattcatcaatgacatcttgaatgccaaaagatgcttctatgagctgctt 22482253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 6442 - 6642
Alignment:
Q  9 atgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcc 108  Q
    ||||||||||| ||||||||||| |||||  | | |||||||||||||||| | ||| ||||||||| |||||| ||||| |||| |||||| |||| ||    
T  6442 atgtcctgaatctcagatgctatctgatgctgagaaatcaaagttttgattaggcttacaatcttgcagactaatgatccgcatccaggagggttggccc 6541  T
Q  109 tatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtctctgc 208  Q
    |||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||| |||||    
T  6542 tatggatcagccgaaggtattcatcaataacatcttcaatgcgaaatgatgcttccctcatatgcttcacccaagttcttattccatcattagtgtctgc 6641  T
Q  209 t 209  Q
    |    
T  6642 t 6642  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 49386835 - 49386889
Alignment:
Q  131 atcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt 185  Q
    |||||| |||||||| |||||||| ||||||||||| |||| |||||||||||||    
T  49386835 atcaatcacatcttctatgcgaaaagatgcttctctaagctacttcacccaagtt 49386889  T

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