View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7711_low_65 (Length: 215)

Name: NF7711_low_65
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7711_low_65
NF7711_low_65
[»] chr6 (4 HSPs)
chr6 (15-197)||(33575808-33575990)
chr6 (15-176)||(5978665-5978826)
chr6 (29-98)||(33568636-33568705)
chr6 (68-114)||(19747033-19747079)
[»] chr3 (1 HSPs)
chr3 (22-158)||(36339760-36339896)
[»] scaffold0707 (1 HSPs)
scaffold0707 (29-98)||(5030-5099)
[»] chr1 (2 HSPs)
chr1 (42-92)||(17954036-17954086)
chr1 (54-101)||(39379422-39379469)
[»] chr7 (4 HSPs)
chr7 (42-92)||(24035416-24035466)
chr7 (53-111)||(26237278-26237336)
chr7 (53-98)||(26229881-26229926)
chr7 (54-98)||(24391079-24391123)
[»] chr4 (1 HSPs)
chr4 (54-102)||(3557388-3557436)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 33575808 - 33575990
Alignment:
Q  15 agagatcgagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctatt 114  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33575808 agagatcgagaacaaaagtttatggagaagcaaggttaaagttttcaattcgggtgataattgttggagaaatattcgaagtttccctttcgttcctatt 33575907  T
Q  115 ttgggaaatgatggtgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggagg 197  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575908 ttgggaaatgatggtgttcattttagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggagg 33575990  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 5978665 - 5978826
Alignment:
Q  15 agagatcgagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctatt 114  Q
    ||||| ||||| | ||||||||||||||||||||||    ||||||| ||||||||||  |||||||||| | ||||||||||| ||||| |||||| ||    
T  5978665 agagaccgagaccgaaggtttatggagaagcaaggtgagggttttcagtttgggtgatttttgttggagagagattcaaagttttcctttggttcctctt 5978764  T
Q  115 ttgggaaatgatggtgtatattgtagtggaactattaactggttagctattcacagtgacta 176  Q
     | || |||||||||||  |||  ||||||||  |||| ||| ||||||||||| |||||||    
T  5978765 atcgggaatgatggtgtgcatttgagtggaacggttaattggctagctattcacggtgacta 5978826  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 33568636 - 33568705
Alignment:
Q  29 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 98  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  33568636 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 19747079 - 19747033
Alignment:
Q  68 gtgataattgttggagaaatattcaaagtttccctttcgttcctatt 114  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||    
T  19747079 gtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 36339760 - 36339896
Alignment:
Q  22 gagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaa 121  Q
    |||||| || |||||||||||||||||||   |||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||| || |  | |    
T  36339760 gagaacgaaagtttatggagaagcaaggtggcagtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcctcttatatgga 36339859  T
Q  122 atgatggtgtatattgtagtggaactattaactggtt 158  Q
    ||||||||||  |||  |||||| |||||||||||||    
T  36339860 atgatggtgtgcatttgagtggagctattaactggtt 36339896  T

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Target: scaffold0707 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 5030 - 5099
Alignment:
Q  29 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 98  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  5030 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 17954086 - 17954036
Alignment:
Q  42 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 92  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  17954086 aagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 39379469 - 39379422
Alignment:
Q  54 agttttcaatttgggtgataattgttggagaaatattcaaagtttccc 101  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttccc 39379422  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 24035416 - 24035466
Alignment:
Q  42 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 92  Q
    ||||| |||| || |||||||| | ||||||||||||||||||||||||||    
T  24035416 aagcagggttaaaattttcaatcttggtgataattgttggagaaatattca 24035466  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 26237278 - 26237336
Alignment:
Q  53 aagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcct 111  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||| ||  ||||||||    
T  26237278 aagtttttagtttgggtgttaactgttggagaaatattcaaagttttccggtcgttcct 26237336  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 26229881 - 26229926
Alignment:
Q  53 aagttttcaatttgggtgataattgttggagaaatattcaaagttt 98  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  26229881 aagtttttagtttgggtggtaactgttggagaaatattcaaagttt 26229926  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 24391079 - 24391123
Alignment:
Q  54 agttttcaatttgggtgataattgttggagaaatattcaaagttt 98  Q
    |||||| | |||||||||||||  |||||||||||||||||||||    
T  24391079 agtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 3557388 - 3557436
Alignment:
Q  54 agttttcaatttgggtgataattgttggagaaatattcaaagtttccct 102  Q
    |||||||| ||| |||||||||  ||||||||||||| |||||||||||    
T  3557388 agttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

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