View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7711_low_68 (Length: 204)

Name: NF7711_low_68
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7711_low_68
NF7711_low_68
[»] chr7 (4 HSPs)
chr7 (9-187)||(41620222-41620401)
chr7 (21-91)||(41615646-41615716)
chr7 (51-112)||(6239849-6239910)
chr7 (31-110)||(32402402-32402481)
[»] chr1 (3 HSPs)
chr1 (28-135)||(16799192-16799297)
chr1 (52-135)||(39311999-39312082)
chr1 (31-103)||(25291744-25291816)
[»] chr8 (3 HSPs)
chr8 (32-187)||(27423198-27423354)
chr8 (17-115)||(24103592-24103690)
chr8 (57-135)||(8120617-8120694)
[»] chr2 (3 HSPs)
chr2 (30-136)||(26312700-26312807)
chr2 (20-112)||(38716069-38716161)
chr2 (54-170)||(42294962-42295079)
[»] chr6 (2 HSPs)
chr6 (28-136)||(29178930-29179038)
chr6 (28-134)||(25436948-25437052)
[»] chr5 (1 HSPs)
chr5 (31-104)||(624379-624451)
[»] chr4 (5 HSPs)
chr4 (50-136)||(27258408-27258494)
chr4 (55-135)||(44343846-44343926)
chr4 (50-136)||(21201268-21201354)
chr4 (51-112)||(35945604-35945665)
chr4 (31-99)||(40087963-40088029)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 41620222 - 41620401
Alignment:
Q  9 ctacattattctatcgatatatgaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcatta 108  Q
    ||||||||||||||||||||| |||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  41620222 ctacattattctatcgatatacgaagctataacttttataacttagagttgtaattttctaaatcatgcaaacctttatttttaccaagttaattcgtta 41620321  T
Q  109 accaaacgtttttaattgaatctctaaa-nnnnnnnatatgctttatttacttctgcattttatgttagtatcttagaat 187  Q
    || ||||||||||| |||||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||    
T  41620322 actaaacgtttttacttgaatctctaaattctttttatatgctttatttacttatgcattttatgttagtatcttagaat 41620401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 41615646 - 41615716
Alignment:
Q  21 atcgatatatgaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttattttt 91  Q
    |||||| || ||||||||||||| ||| | ||||||||||||||||||||||| ||||||||| |||||||    
T  41615646 atcgatgtacgaagctataacttccataattcagagttgtaactttctaaatcttgcaaacctatattttt 41615716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 6239849 - 6239910
Alignment:
Q  51 tcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaacca 112  Q
    |||||||||||  |||||||||||||||||||  ||| |||||||||| ||||| |||||||    
T  6239849 tcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaacca 6239910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 32402402 - 32402481
Alignment:
Q  31 gaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaac 110  Q
    ||||||||| ||||||| ||||| ||||||| ||||||||||| || ||| ||  || |||||| ||||||||| |||||    
T  32402402 gaagctatagctttcataactcaaagttgtagctttctaaatcttgaaaagctccatctttaccgagttaattccttaac 32402481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 16799297 - 16799192
Alignment:
Q  28 tatgaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattga 127  Q
    ||||||| |||||||| |||  ||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||| || |||| ||||||| | ||||    
T  16799297 tatgaagttataacttccat--ctcagcgttgtagctttctaaatcttgcaaacctctatttttaccaagttaattcctttaccacacgttttcacttga 16799200  T
Q  128 atctctaa 135  Q
    ||||||||    
T  16799199 atctctaa 16799192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 39312082 - 39311999
Alignment:
Q  52 cagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattgaatctctaa 135  Q
    |||||||||| ||||||||||| ||||||||| ||| |||| ||||||||||| ||||||| || |||| | ||||||||||||    
T  39312082 cagagttgtagctttctaaatcttgcaaacctctatctttatcaagttaattccttaaccacactttttcacttgaatctctaa 39311999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 25291744 - 25291816
Alignment:
Q  31 gaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaatt 103  Q
    |||||||||| || ||| |||| ||| |||| ||||||||||| ||||||||| ||| || | ||||||||||    
T  25291744 gaagctataatttccataactctgagctgtagctttctaaatcttgcaaacctctatcttgatcaagttaatt 25291816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 27423354 - 27423198
Alignment:
Q  32 aagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattgaatct 131  Q
    |||||||  ||| ||||||||||  ||||| ||||||||||| | ||||| ||||||||||| |||||||||  ||||||| || |||| | ||||||||    
T  27423354 aagctattgcttccatgactcaggattgtagctttctaaatcttacaaacatttatttttactaagttaatttcttaaccacactttttcacttgaatct 27423255  T
Q  132 ctaaa-nnnnnnnatatgctttatttacttctgcattttatgttagtatcttagaat 187  Q
    |||||        |||||||||||||||||||| ||||||  ||||| |||||||||    
T  27423254 ctaaatcttttttatatgctttatttacttctgaattttactttagtgtcttagaat 27423198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 24103690 - 24103592
Alignment:
Q  17 ttctatcgatatatgaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaac 115  Q
    ||||||| |||||  |||||||||||| ||| ||||| ||||||||||||||||||  | ||||||| |||||||||  ||||||||  ||||||||||    
T  24103690 ttctatcaatatacaaagctataacttccataactcacagttgtaactttctaaattttacaaacctctatttttacgtagttaatttcttaaccaaac 24103592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 8120617 - 8120694
Alignment:
Q  57 ttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattgaatctctaa 135  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||| || ||||||| |  |||||| ||||||||||||    
T  8120617 ttgtagctttctaaatcttgcaaacctttatctttaccaagttaactccttaaccaca-ttttttacttgaatctctaa 8120694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 26312700 - 26312807
Alignment:
Q  30 tgaagctataactttcatgactcaga-gttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattgaa 128  Q
    |||||||||||||| ||| ||||| | ||| || ||||||||||| ||||||||| ||| |||| ||||||||||| ||||||| |  |||| |||||||    
T  26312700 tgaagctataacttccataactcaaaagttatagctttctaaatcgtgcaaacctctatctttagcaagttaattctttaaccacatcttttcaattgaa 26312799  T
Q  129 tctctaaa 136  Q
    ||||||||    
T  26312800 tctctaaa 26312807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 38716069 - 38716161
Alignment:
Q  20 tatcgatatatgaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaacca 112  Q
    ||||||| ||||||  |||| ||| ||| |||| |||||||| |||| |||||| || |||||| ||| ||||| ||||||||||||||||||    
T  38716069 tatcgatgtatgaatttatagcttccataactccgagttgtagctttataaatcttgtaaacctctatgtttactaagttaattcattaacca 38716161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 42295079 - 42294962
Alignment:
Q  54 gagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattgaatctctaaa-nnnnnnnatatgcttt 152  Q
    |||||||| |||| |||||| | |||| || |||||||||||||||||||| ||||| | || |||| |  ||||||||||||        | |||||||    
T  42295079 gagttgtagctttataaatcttacaaatctctatttttaccaagttaattccttaacaatactttttcacatgaatctctaaattcttttgacatgcttt 42294980  T
Q  153 atttacttctgcatttta 170  Q
    ||||||||||||||||||    
T  42294979 atttacttctgcatttta 42294962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 29179038 - 29178930
Alignment:
Q  28 tatgaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattga 127  Q
    |||||||||||||||| ||| ||| ||||||||||| ||||||||| | ||||||| ||| |||| ||| ||||||  ||||||| |  |||| | ||||    
T  29179038 tatgaagctataacttccataacttagagttgtaacgttctaaatcttacaaacctctatctttatcaaattaatttcttaaccacatattttcacttga 29178939  T
Q  128 atctctaaa 136  Q
    |||||||||    
T  29178938 atctctaaa 29178930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 25437052 - 25436948
Alignment:
Q  28 tatgaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattga 127  Q
    |||||||||||| ||| |||  || ||||||||||||||||||||| ||  || || ||| |||||||||||||||| | ||||| || |||| | ||||    
T  25437052 tatgaagctatagcttccat--cttagagttgtaactttctaaatcttgtgaatctctatctttaccaagttaattcctcaaccacactttttcacttga 25436955  T
Q  128 atctcta 134  Q
    |||||||    
T  25436954 atctcta 25436948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 624451 - 624379
Alignment:
Q  31 gaagctataactttcatgactcagagttgtaacttt-ctaaatcatgcaaacctttatttttaccaagttaattc 104  Q
    ||||||||||||| |||  || ||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||    
T  624451 gaagctataacttccat--cttagagttgtagcttttctaaatcctgcaaacctctatttttaccaagttaattc 624379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 27258494 - 27258408
Alignment:
Q  50 ctcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattgaatctctaaa 136  Q
    |||||| |||||  ||| |||||| ||||||||||||| |||  ||||||||||| ||||||| || |||| | |||||||||||||    
T  27258494 ctcagaattgtagttttttaaatcttgcaaacctttatctttgtcaagttaattccttaaccacactttttcatttgaatctctaaa 27258408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 44343926 - 44343846
Alignment:
Q  55 agttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattgaatctctaa 135  Q
    ||||||| ||||||||||| |||||  || ||| |||||||||||||||| ||||||| || |||| | || |||||||||    
T  44343926 agttgtacctttctaaatcttgcaagtctctatctttaccaagttaattccttaaccacactttttcacttaaatctctaa 44343846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 21201354 - 21201268
Alignment:
Q  50 ctcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaaccaaacgtttttaattgaatctctaaa 136  Q
    |||||| | ||| |||| |||||| ||||||||||||| |||   |||||||||| ||||||| || |||| | |||||||||||||    
T  21201354 ctcagaatcgtagctttataaatcttgcaaacctttatctttgtgaagttaattccttaaccacactttttcatttgaatctctaaa 21201268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 35945604 - 35945665
Alignment:
Q  51 tcagagttgtaactttctaaatcatgcaaacctttatttttaccaagttaattcattaacca 112  Q
    ||||| ||||| ||||||||||| |||| |||| ||| |||||||| ||||||| |||||||    
T  35945604 tcagatttgtagctttctaaatcttgcagacctctatatttaccaatttaattccttaacca 35945665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 40088029 - 40087963
Alignment:
Q  31 gaagctataactttcatgactcagagttgtaactttctaaatcatgcaaacctttatttttaccaagtt 99  Q
    ||||||||| |||||||  || ||||||||| ||||||||||| |||||| || ||| |||||||||||    
T  40088029 gaagctatagctttcat--cttagagttgtagctttctaaatcttgcaaatctctatctttaccaagtt 40087963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University