View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7711_low_7 (Length: 530)
Name: NF7711_low_7
Description: NF7711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7711_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 23 - 527
Target Start/End: Original strand, 3076790 - 3077294
Alignment:
| Q |
23 |
aacaaattagtcaaagtgaactatgctatgattattgataagaaattaaggtcctggctatgctttgtagtgtcgtcaagtagcggctatagcagaaaca |
122 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3076790 |
aacaaattagacaaagtgaactatgctatgattattggtaagaaattaaggtcctggctatgctttgtagtgtcatcaagtagcggctatagcagaaaca |
3076889 |
T |
|
| Q |
123 |
gaattttaacatatcgttatggttttatgacacacattttagttcaaagtatcctcaaatatcggatataggaaagcatagcataatttgaacaaactac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076890 |
gaattttaacatatcgttatggttttatgacacacattttagttcaaagtatcctcaaatatcggatataggaaagcatagcataatttgaacaaactac |
3076989 |
T |
|
| Q |
223 |
tatattgcaatctgtgattgacaacaatgttattctttcatcaaactgcatagattaggttttttaaatatttttgaaaattatttcactttgtgtcctc |
322 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076990 |
tacattgcaatctgtgattgacaacaatgttattctttcatcaaactgcatagattaggttttttaaatatttttgaaaattatttcactttgtgtcctc |
3077089 |
T |
|
| Q |
323 |
tatatgctgccatcttatttggcttggtgttgtattggtttttaaagttttctctttgtgtgtgtatgtattcatttctattcatatgtattcaagtact |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3077090 |
tatatgctgccatcttatttggcttggtgttgtattggtttttaaagttttctctttgtgtgtgtatgtattcatttctattcatatgtattcaagtact |
3077189 |
T |
|
| Q |
423 |
gtgtatatctgcattcatattcaatttagggtttcaagatttaaaaatttaagctattgttttgttctactgaaatataggagcttattgttattgatga |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3077190 |
gtgtatatctgcattcatattcaatttagggtttcaagatttaaaaatttaagctattgttttgttctactgaaatataggagcttattgttattgatga |
3077289 |
T |
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| Q |
523 |
tgtcc |
527 |
Q |
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|||| |
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| T |
3077290 |
agtcc |
3077294 |
T |
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