View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_high_18 (Length: 368)
Name: NF7712_high_18
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_high_18 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 40664994 - 40665329
Alignment:
| Q |
16 |
atttcgtatatataaaattgtgatcatataatacttaatttcaatgttnnnnnnntatttgttaatgtggtttatgttgtgttgcagggaaagaaaagga |
115 |
Q |
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| T |
40664994 |
atttcgtatatataaaattgtgatcatataatacttaatttcaatgttaaaaaaatatttgttaatgtggtttatgttgtgttgcagggaaagaaaagga |
40665093 |
T |
|
| Q |
116 |
aggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcgagttcggcttggaga |
215 |
Q |
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| T |
40665094 |
aggatagtgtttgtattgctcttggtgatgatacctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcgagttcggcttggaga |
40665193 |
T |
|
| Q |
216 |
tgttgtgtctgtgcatcagtgtcctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctcttt |
315 |
Q |
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| T |
40665194 |
tgttgtgtctgtgcatcagtgtactgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctcactggaaatctcttt |
40665293 |
T |
|
| Q |
316 |
gatgcattcttgaaacgtgagttcccacctttcatc |
351 |
Q |
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| T |
40665294 |
gatgctttcttgaaacgtgagttcccacctttcatc |
40665329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 71 - 351
Target Start/End: Complemental strand, 40725495 - 40725215
Alignment:
| Q |
71 |
tatttgttaatgtggtttatgttgtgttgcagggaaagaaaaggaaggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattag |
170 |
Q |
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| T |
40725495 |
tatttgttaatgtggtttatgttgtgttgcagggaaagaaaaggaaggatagtgtttgtattgctcttggtgatgatacctgtgaagagcctaggattag |
40725396 |
T |
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| Q |
171 |
gatgaacaaagttgtgaggtcgaatttgcgagttcggcttggagatgttgtgtctgtgcatcagtgtcctgatgtcaagtatggtaaacgtgtgcacatt |
270 |
Q |
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| T |
40725395 |
gatgaacaaagttgtgaggtcgaatttgcgagttcggcttggagatgttgtgtctgtgcatcagtgtactgatgtcaagtatggtaaacgtgtgcacatt |
40725296 |
T |
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| Q |
271 |
ctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgcattcttgaaacgtgagttcccacctttcatc |
351 |
Q |
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| T |
40725295 |
ctgcctattgatgatacaattgaaggtctcactggaaatctctttgatgctttcttgaaacgtgagttcccacctttcatc |
40725215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 338
Target Start/End: Original strand, 109314 - 109551
Alignment:
| Q |
101 |
agggaaagaaaaggaaggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcg |
200 |
Q |
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|||| ||||||||||| |||||| | |||||||| || |||||||| | ||||||||||| | || || |||||||| ||||||||| ||| | | |
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| T |
109314 |
agggtaagaaaaggaaagatactatatgtattgcactcgctgatgaaacatgtgaagagccaaaaataagaatgaacaaggttgtgaggaacaatcttag |
109413 |
T |
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| Q |
201 |
agttcggcttggagatgttgtgtctgtgcatcagtgtcctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctc |
300 |
Q |
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| T |
109414 |
ggttaggcttggagatgttgtttcggtgcatcaatgtgctgatgtcaaatatggaaagagagttcacattcttcccgtcgatgatactattgaaggagtt |
109513 |
T |
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| Q |
301 |
actggaaatctctttgatgcattcttgaaacgtgagtt |
338 |
Q |
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| T |
109514 |
actgggaatctctttgatgcatacttaaaacgtgagtt |
109551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 338
Target Start/End: Complemental strand, 41093982 - 41093745
Alignment:
| Q |
101 |
agggaaagaaaaggaaggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcg |
200 |
Q |
| |
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|||| ||||||||||| |||||| | |||||||| || |||||||| | ||||||||||| | || || |||||||| ||||||||| ||| | | |
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| T |
41093982 |
agggtaagaaaaggaaagatactatatgtattgcactcgctgatgaaacatgtgaagagccaaaaataagaatgaacaaggttgtgaggaacaatcttag |
41093883 |
T |
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| Q |
201 |
agttcggcttggagatgttgtgtctgtgcatcagtgtcctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctc |
300 |
Q |
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| T |
41093882 |
ggttaggcttggagatgttgtttcggtgcatcaatgtgctgatgtcaaatatggaaagagagttcacattcttcccgtcgatgatactattgaaggagtt |
41093783 |
T |
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| Q |
301 |
actggaaatctctttgatgcattcttgaaacgtgagtt |
338 |
Q |
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| T |
41093782 |
actgggaatctctttgatgcatacttaaaacgtgagtt |
41093745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 338
Target Start/End: Original strand, 27975937 - 27976174
Alignment:
| Q |
101 |
agggaaagaaaaggaaggatactgtttgtattgctcttgctgatgatagctgtgaagagcctaggattaggatgaacaaagttgtgaggtcgaatttgcg |
200 |
Q |
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|||| |||||||| |||||||| |||||||||| ||||||||||| | ||||||||||| | ||| || ||||| || |||||||| ||| | | |
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| T |
27975937 |
agggtaagaaaagaaaggatacgatttgtattgcacttgctgatgaaacatgtgaagagccaaagataagaatgaataaggttgtgagaaacaatcttag |
27976036 |
T |
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| Q |
201 |
agttcggcttggagatgttgtgtctgtgcatcagtgtcctgatgtcaagtatggtaaacgtgtgcacattctgcctattgatgatacaattgaaggtctc |
300 |
Q |
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| T |
27976037 |
ggttaggcttggtgatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaagcgagttcatattcttcctgttgatgatactattgaaggggtt |
27976136 |
T |
|
| Q |
301 |
actggaaatctctttgatgcattcttgaaacgtgagtt |
338 |
Q |
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||||| ||||| |||||||| | ||| || |||||||| |
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| T |
27976137 |
actgggaatctatttgatgcttacttaaagcgtgagtt |
27976174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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