View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_high_21 (Length: 331)
Name: NF7712_high_21
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 22598520 - 22598801
Alignment:
| Q |
29 |
tcaatttttcaatcttaacagttaacaccttaaccaattttccaaatataacttagatgatagatcaagttaaggtgtgtttggagttttgaaaaagtaa |
128 |
Q |
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| T |
22598520 |
tcaatttttcaatcttaacggttaacaccttaaccaattttccaaatataacttagatgatagatcaagttaaggtgtgtttggagttttgaaaaagtaa |
22598619 |
T |
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| Q |
129 |
cgtatgacctgaaatagtacctttgaaaagggcttttatttttctttt--nnnnnnnnggacttttatttgatatattggacaaatctccgtacacagta |
226 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22598620 |
cgtatgacctgaactagtacctttgaaaagggcttttatttttcttttaaaaaaaaaaggacttttaattgatatattggacaaatctccgtacacagta |
22598719 |
T |
|
| Q |
227 |
gtgcaccgttctaaactttgtattgtgtaattcaagagtatgtttgtgaaggagtttttggaggggagtaaataggtcatta |
308 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
22598720 |
gtgcacagttctaaactttgtattgtgtaattcaagagtatgtttgtgaatgagttttttgaggggagtaaataggtcatta |
22598801 |
T |
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