View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_high_22 (Length: 313)
Name: NF7712_high_22
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 130 - 302
Target Start/End: Complemental strand, 9879821 - 9879649
Alignment:
| Q |
130 |
atatacgttatttagcatgcaaaatcaatctacaacgtaaaactgattgaaaattgaaagcaagaaaataaagaaaacgtgattagtactctgacagcag |
229 |
Q |
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| T |
9879821 |
atatacgttatttagcatgcaaaatcaatctacaacataaaactgattgaaaattgaaagcaagaaaataaagaaaacgtgattagtactctgacagcag |
9879722 |
T |
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| Q |
230 |
ttgatgaaatccatccatgccacggttttaatgtaacttcatatgattcttcaaccactttctccattttctt |
302 |
Q |
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| T |
9879721 |
ttgatgaaatccatccatgccacggttttaatgtaacttcatatgattcttcaaccactttctccattttctt |
9879649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 9872829 - 9872736
Alignment:
| Q |
209 |
tgattagtactctgacagcagttgatgaaatccatccatgccacggttttaatgtaacttcatatgattcttcaaccactttctccattttctt |
302 |
Q |
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| T |
9872829 |
tgattagtactctgacagcagttgatgaaatccatccatgccatggttttaatgttacttcataagattcttcaactattttctccattttctt |
9872736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 9879875 - 9879836
Alignment:
| Q |
101 |
gacataatcaagaatatgtgattatcaagatatacgttat |
140 |
Q |
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| T |
9879875 |
gacataatcaagaatatgtgattatcaagatatacgttat |
9879836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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