View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7712_high_31 (Length: 270)
Name: NF7712_high_31
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 55181130 - 55180887
Alignment:
| Q |
6 |
taacttggattaatctattgttggtcaattgcttatccaattcaacttaaacaatataatctttaattccactttattttattnnnnnnnn---gatgaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55181130 |
taacttggattaatctattgttggtcaattgcttatcaaattcaacttaaacaatataatctttaattccactttattttattaaaaaaaaaaagatgaa |
55181031 |
T |
|
| Q |
103 |
atggtttttgactcaaaattcattgttggaaaggtgttaaataaaattggaggaaaggaaaatgaagaacaatcaaagtttgattttaagacgcatagag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55181030 |
atggtttttgactcaaaattcattgttggaaaggtgttaaataaaattggaggaaaggaaaacgaagaacaatcaaagtttgattttaagacgcatagag |
55180931 |
T |
|
| Q |
203 |
agggctgcttctaatattaatattatagatgattattatgtcatggttct |
252 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55180930 |
agggctgcttctaat------attatagatgattattatgtcatggttct |
55180887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University