View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_high_36 (Length: 242)
Name: NF7712_high_36
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 17953852 - 17953640
Alignment:
| Q |
15 |
atgaatggtgtcgtgacaaatttgcatatctttattcttttttcaaactagactagtcatttcagattgacattattatcctcattgtttttcttttctt |
114 |
Q |
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| T |
17953852 |
atgaatggtgtcgtgacaaatttgcatatctttattcttttttcaaactagactagtcatttcagattgacattattatcctcattgtttttcttttctt |
17953753 |
T |
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| Q |
115 |
gtacattgttcttttctatcaggaccaacaatcgttatgtgggaaattactttgatgtcaaataaatttttgtcatcattatgaagttttgtttatttta |
214 |
Q |
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| T |
17953752 |
gtacattgttcttttctatcaggaccaacaatcgttatgtgggaaattactttgatgtcaaataaatttttgtcatcattatgaagttttgtttatttta |
17953653 |
T |
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| Q |
215 |
atccaaatgatgt |
227 |
Q |
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| T |
17953652 |
atcgaaatgatgt |
17953640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 17721376 - 17721493
Alignment:
| Q |
25 |
tcgtgacaaatttgcatatctttattcttttttcaaactagactagtcatttcagattgacattattatcctcattgtttttcttttcttgtacattgtt |
124 |
Q |
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| T |
17721376 |
tcgtgaaatatttgcatatctttattcttttt-caaactagattagtcatttcagattaacattatgaatctcatc----------tcatgtacattgtt |
17721464 |
T |
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| Q |
125 |
cttttctatcaggaccaacaatcgttatg |
153 |
Q |
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| T |
17721465 |
cttttctatcagcaccaacaattgttatg |
17721493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 19022605 - 19022722
Alignment:
| Q |
25 |
tcgtgacaaatttgcatatctttattcttttttcaaactagactagtcatttcagattgacattattatcctcattgtttttcttttcttgtacattgtt |
124 |
Q |
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| T |
19022605 |
tcgtgaaatatttgcatatctttattcttttt-caaactagattagtcatttcagattaacattatgaatctcatc----------tcatgtacattgtt |
19022693 |
T |
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| Q |
125 |
cttttctatcaggaccaacaatcgttatg |
153 |
Q |
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| T |
19022694 |
cttttctatcagcaccaacaattgttatg |
19022722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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