View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7712_high_4 (Length: 468)
Name: NF7712_high_4
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 42842373 - 42842808
Alignment:
| Q |
16 |
attaacatcgaagagaatcaaattttactccttgagagaaacacactccggtgtttcaaagtaacaacattaggcaacaacccaaatggattgtactttg |
115 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42842373 |
attaacattggagagaatcaaattttactccttgagagaaacacactccggtgtttcaaagtaacaacattaggcaacaacccaaatggattgtactttg |
42842472 |
T |
|
| Q |
116 |
ttaattgaagaatagaagtaaaagaaaaaggctgtacacttttagaaagtgacattaaaatcacagcaacataaattcctaaattttaagccagtattaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42842473 |
ttaattgaagaatagaagtaaaagaaaaaggctgtacacttttagaaagtgacattaaaatcacagcaacataaattcctaaattttaagccagtattaa |
42842572 |
T |
|
| Q |
216 |
taacagaaaaataaactcttagcaacctagataaaacatcaaacgttgtaaaaaatttaggcatgttttaaacattatttgtatacttgtgcatactttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42842573 |
taacagaaaaataaactcttagcaacctagataaaacatcaaacgttgtaaattttttaggcatgttttaaacattatttgtatacttgtgcatactttt |
42842672 |
T |
|
| Q |
316 |
atacattgtagagttctaatcattgagtttattctcagaatctctgatggaggactctggcaattttgatgtaagttgtggcggagagagtgtatcgatg |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42842673 |
attcattgtagagttctaatcattgagtttattctcagaatctctgatggaggactctggcaattttgatgtaagttgtggcggagagagtgtatcgatg |
42842772 |
T |
|
| Q |
416 |
actccgtatcaaaatctgatgatgctgaagtctaag |
451 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42842773 |
actctgtatcaaaatctgatgatgctgaagtctaag |
42842808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 89 - 449
Target Start/End: Complemental strand, 7364541 - 7364166
Alignment:
| Q |
89 |
gcaacaacccaaatggattgtac--------tttgttaattgaagaatagaagtaaaagaaaaaggctgtacactttta--gaaagtgacattaaaatca |
178 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | | | |||||| ||||||||||| |||||| |
|
|
| T |
7364541 |
gcaacaacccaaatggattgtacccttattatttgttaatttaaga---gaagtaaaagaaaaaggttttgcccttttatagaaagtgacatgcaaatca |
7364445 |
T |
|
| Q |
179 |
cagcaacataaattcctaaattttaagccagtattaataacagaaaaa----taaactcttagcaacctagataaaacatcaaacgttgtaaaaaattta |
274 |
Q |
| |
|
||| |||||| | ||||||| ||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| | | |
|
|
| T |
7364444 |
cagaaacatatactcctaaaatttaaaccagtattaataacaataaaaataataaactcttagcaaca-agataaaacatcaaacgttgtaaattttgtt |
7364346 |
T |
|
| Q |
275 |
ggcatgttttaaacattatttgtatacttgtgcatacttttatacattgtagagttctaatcatt-----gagtttattctcagaatctctgatggagga |
369 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| | |||| | | ||||||||||||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
7364345 |
ggcatgatttcaacattatttgtatacttgtggaaacttcttttcattgtagagttctaatcattatattgaatttattttcagaatctctgatggagga |
7364246 |
T |
|
| Q |
370 |
ctctggcaattttgatgtaagttgtggcggagagagtgtatcgatgactccgtatcaaaatctgatgatgctgaagtcta |
449 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
7364245 |
ctctagcaattttgatgtaagttgtggcggagagagtgtatcgatgactctgtatcaaaatctgatgttgctgaagtcta |
7364166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 12078545 - 12078664
Alignment:
| Q |
148 |
tgtacacttttagaaagtgacattaaaatcacagcaacataaattcctaaattttaagccagtattaataacagaa-aaataaactcttagcaacctaga |
246 |
Q |
| |
|
||||| |||||||||||||| || |||||||| |||||| |||||||||||||||| |||||||||| | | || ||| ||||||||||| || ||| |
|
|
| T |
12078545 |
tgtacccttttagaaagtgagatacaaatcacaccaacattaattcctaaattttaaaccagtattaacagaaaaataaacaaactcttagcggcc-aga |
12078643 |
T |
|
| Q |
247 |
taaaacatcaaacgttgtaaa |
267 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12078644 |
taaaacatcaaacgttgtaaa |
12078664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 12627345 - 12627394
Alignment:
| Q |
319 |
cattgtagagttctaatcattgagtttattctcagaatctctgatggagg |
368 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||||||||||| |||||||| |
|
|
| T |
12627345 |
cattgtagagttcttatcatagagttcactctcagaatctccgatggagg |
12627394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University