View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_high_5 (Length: 455)
Name: NF7712_high_5
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 22598320 - 22598217
Alignment:
| Q |
210 |
gaacgatatacaatgaagatatgataaaatttaagactaaaatttacaacattacatctatttatgtagttgttttttaaatgacaaatgttcatattgc |
309 |
Q |
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| T |
22598320 |
gaacgatatacaatgaagatatgataaaatttaagactaaaatttacaacattacatttatttatgtagttgtttttttaatgacaaatgttcatattgc |
22598221 |
T |
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| Q |
310 |
tccc |
313 |
Q |
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|||| |
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| T |
22598220 |
tccc |
22598217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 22598488 - 22598417
Alignment:
| Q |
33 |
gttcgttttcttaaaaaggtgggtcgaatagtttaaattatgtctatttttctctaaacttttattttatga |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22598488 |
gttcgttttcttaaaaaggtgggtcgaatagtttaaattatgtctatttttctctaaacttttattttatga |
22598417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 22598147 - 22598091
Alignment:
| Q |
338 |
ccccattctacaccattccatgtgccttttttaattaatttcagaggggcaattttg |
394 |
Q |
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| T |
22598147 |
ccccattctacaccattccatgtgccttttttaattaatttcaaaggggcaattttg |
22598091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 421
Target Start/End: Complemental strand, 22598067 - 22598034
Alignment:
| Q |
388 |
aattttgcccaacacactcagcaacttcctcacc |
421 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
22598067 |
aattttgtccaacacactcagcaacttcctcacc |
22598034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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