View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7712_high_6 (Length: 455)

Name: NF7712_high_6
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7712_high_6
NF7712_high_6
[»] chr4 (8 HSPs)
chr4 (14-439)||(27426382-27426807)
chr4 (42-159)||(27416260-27416377)
chr4 (45-148)||(27420803-27420906)
chr4 (44-159)||(27569459-27569575)
chr4 (98-163)||(27413358-27413423)
chr4 (53-95)||(27565598-27565640)
chr4 (403-435)||(44620821-44620853)
chr4 (403-435)||(44621161-44621193)
[»] chr7 (1 HSPs)
chr7 (403-435)||(47129256-47129288)
[»] chr3 (1 HSPs)
chr3 (407-436)||(47157661-47157690)
[»] chr2 (1 HSPs)
chr2 (402-435)||(5542961-5542994)
[»] chr8 (1 HSPs)
chr8 (403-435)||(18371957-18371989)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 439
Target Start/End: Original strand, 27426382 - 27426807
Alignment:
Q  14 agacatgaggtaacttcccttcataaacaacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggt 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27426382 agacatgaggtaacttcccttcataaagaacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacacaggcctcattccatggt 27426481  T
Q  114 ccctgttaggatatccttatttaaagagttgaatggttagtacttagtaggctattttatatgacagggtttagtatgagacaatggctcacgaacctcc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27426482 ccctgttaggatatccttatttaaagagttgaatggttagtacttagtaggctatattatatgacagggtttagtatgagacaatggctcacgaacctcc 27426581  T
Q  214 acatggtgttttagaataatggcccactttgaagatgagttgcccacatttttattgctcgaataattaccttgttctttcatccacatacacttgtttt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27426582 acatggtgttttagaataatggcccactttgaagatgagttgcccacatttttattgctcgaataattaccttgttctttcatccacatacacttgtttt 27426681  T
Q  314 gtcgtttgcacacaacgtcaacttgatatgccactgactaccattatcaagagtaattttgatacaacgtcacctttagtcaacaatcagctctgatacc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27426682 gtcgtttgcacacaacgtcaacttgatatgccactgactaccattatcaagagtaattttgatacaacgtcacctttagtcaacaatcagctctgatacc 27426781  T
Q  414 actgttggatcatgaggggagcctag 439  Q
    ||||||||||||||||||||||||||    
T  27426782 actgttggatcatgaggggagcctag 27426807  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 27416260 - 27416377
Alignment:
Q  42 aacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagag 141  Q
    ||||||| ||||||| |||||||  |||||||  |||||||||||||||||||| ||||||||||  ||||| ||||||||||||||||||| ||||||     
T  27416260 aacaagtacacaataccaattcatcaacaagggaaattatttcactgaatgacataggcctcattatatggttcctgttaggatatccttatctaaagaa 27416359  T
Q  142 ttgaatggttagtactta 159  Q
    ||||||||||||||||||    
T  27416360 ttgaatggttagtactta 27416377  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 27420803 - 27420906
Alignment:
Q  45 aagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagttg 144  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||  ||||| ||||| ||||||||||||||||||| |||||| |||    
T  27420803 aagtgtacaataacaattcagtaacaaagtcaattgtttcactgaatgacataggctgcattctatggtgcctgttaggatatccttatctaaagaattg 27420902  T
Q  145 aatg 148  Q
    ||||    
T  27420903 aatg 27420906  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 27569575 - 27569459
Alignment:
Q  44 caagtgcacaataacaattc-agtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagt 142  Q
    |||||||||||| ||||| | |||||||| |||||||||| |||| ||||||| |  |||||||| ||||| ||||||||||||||||||| |||||| |    
T  27569575 caagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggttcctgttaggatatccttatctaaagaat 27569476  T
Q  143 tgaatggttagtactta 159  Q
    |||||||||| ||||||    
T  27569475 tgaatggttactactta 27569459  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 27413358 - 27413423
Alignment:
Q  98 ggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagtacttagtag 163  Q
    |||||||||| ||||| ||||||||||||||||||| | |||| ||||||||||| |||| |||||    
T  27413358 ggcctcattctatggttcctgttaggatatccttatcttaagaattgaatggttattactgagtag 27413423  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 27565640 - 27565598
Alignment:
Q  53 aataacaattcagtaacaaggtcaattatttcactgaatgaca 95  Q
    |||||||||||||||||||||| || ||||| |||||||||||    
T  27565640 aataacaattcagtaacaaggtaaactattttactgaatgaca 27565598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 44620853 - 44620821
Alignment:
Q  403 gctctgataccactgttggatcatgaggggagc 435  Q
    |||||||||||||| ||||||||||||||||||    
T  44620853 gctctgataccactattggatcatgaggggagc 44620821  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 44621193 - 44621161
Alignment:
Q  403 gctctgataccactgttggatcatgaggggagc 435  Q
    ||||||||||||||||||||||||||| |||||    
T  44621193 gctctgataccactgttggatcatgagaggagc 44621161  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 47129288 - 47129256
Alignment:
Q  403 gctctgataccactgttggatcatgaggggagc 435  Q
    |||||||||||||||||||||||||||||||||    
T  47129288 gctctgataccactgttggatcatgaggggagc 47129256  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 436
Target Start/End: Complemental strand, 47157690 - 47157661
Alignment:
Q  407 tgataccactgttggatcatgaggggagcc 436  Q
    ||||||||||||||||||||||||||||||    
T  47157690 tgataccactgttggatcatgaggggagcc 47157661  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 5542961 - 5542994
Alignment:
Q  402 agctctgataccactgttggatcatgaggggagc 435  Q
    |||||||||||||||||||||||||| |||||||    
T  5542961 agctctgataccactgttggatcatggggggagc 5542994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 18371957 - 18371989
Alignment:
Q  403 gctctgataccactgttggatcatgaggggagc 435  Q
    ||||||||||||||||||| |||||||||||||    
T  18371957 gctctgataccactgttgggtcatgaggggagc 18371989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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