View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_11 (Length: 414)
Name: NF7712_low_11
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 2663604 - 2663971
Alignment:
| Q |
16 |
agtattaacaaattttaatttcaagtatatgtgtaggaattgcacctttcttgggtcaaagagatcaacaaactatgaacaggatgtgattgatagttga |
115 |
Q |
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| T |
2663604 |
agtattaacaaattttaatttcaagtatatgtgtaggaattgtacctttcttggatcaaagagatcaacaaactatgaacaggatgtgattgatagttga |
2663703 |
T |
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| Q |
116 |
aattttcatgtaagataagatgaaattacaaaaggaaaacgagacatgttgcatggtaaaggccaaaaatagtgatgggattaagatatgcatgttcaaa |
215 |
Q |
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| T |
2663704 |
aatttccaagtaagataagatgaaa--acaaaaggaaaacgagacatgttgcatggtaaaggccaaaaatagtgatgggattaagatatgcatgttcaaa |
2663801 |
T |
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| Q |
216 |
tatatgacattccgaagcaaaagcataactaacacttttatacttcgaaaaaatttcatattgtgtttgtccttttaaattcttccatgttannnnnnnn |
315 |
Q |
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| T |
2663802 |
tatatgacattccgaagcaaaagcataactaacacttttatacttcgaaaaaatttcatattgtgtttgtccttttaaattcttccatgttatttttatt |
2663901 |
T |
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| Q |
316 |
ggtaatccttatcttcttcgatttgggttgaaggttcaatatttcagtcctcctgcaagagttcactatt |
385 |
Q |
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| T |
2663902 |
ggtaatccttattttcttcgatttgggttgaaggttcaatatttcaatcctcctgcaagagttcactatt |
2663971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 99 - 385
Target Start/End: Original strand, 19009888 - 19010174
Alignment:
| Q |
99 |
atgtgattgatagttgaaattttcatgtaagataagatgaaattacaaaaggaaaacgagacatgttgcatggtaaaggccaaaaatagtgatgggatta |
198 |
Q |
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| T |
19009888 |
atgtgattgatagttgaaattttcatgtaagataagatgaaattacaaaaggaaaacgagacatgttgcatggtaaaggccaaaaatagtgatgggatta |
19009987 |
T |
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| Q |
199 |
agatatgcatgttcaaatatatgacattccgaagcaaaagcataactaacacttttatacttcgaaaaaatttcatattgtgtttgtccttttaaattct |
298 |
Q |
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| T |
19009988 |
agatatgcatgttcaaatatatgacattccgaagcaaaagcataactaacacttttatacttcgaaaaaatttcatattgtgtttgtccttttaaattct |
19010087 |
T |
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| Q |
299 |
tccatgttannnnnnnnggtaatccttatcttcttcgatttgggttgaaggttcaatatttcagtcctcctgcaagagttcactatt |
385 |
Q |
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| T |
19010088 |
tccatgttatttttattggtaatccttattttcttcgatttgggttgaaggttcaatatttcaatcctcctgcaagagttcactatt |
19010174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 19009860 - 19009892
Alignment:
| Q |
16 |
agtattaacaaattttaatttcaagtatatgtg |
48 |
Q |
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| T |
19009860 |
agtattaacaaattttaatttcaagtatatgtg |
19009892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 66 - 385
Target Start/End: Original strand, 19189649 - 19189965
Alignment:
| Q |
66 |
ttgggtcaaagagatcaacaaactatgaacaggatgtgattgatagttgaaattttcatgtaagataagatgaaattacaaaaggaaaacga-gacatgt |
164 |
Q |
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|||| ||||||||||||||||||| ||| ||| || |||||||||||||||||||||| |||||||||||||||| ||| |||| |||| ||||||| |
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| T |
19189649 |
ttggatcaaagagatcaacaaactctgagcagtatctgattgatagttgaaattttcaagtaagataagatgaaaa---aaagggaagacgaagacatgt |
19189745 |
T |
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| Q |
165 |
tgcatggtaaaggccaaaaatagtgatgggattaagatatgcatgttcaaatat-atgacattccgaagcaaaagcataactaacacttttatacttcga |
263 |
Q |
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| T |
19189746 |
tgcattggaaagtccaaaattagtgatgggattaagatatgtatgttcaagtattatgacattctgaaacaaaagcatgacaaacacttttggacttgga |
19189845 |
T |
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| Q |
264 |
aaaaatttcatattgtgtttgtccttttaaattcttccatgttannnnnnnnggtaatccttatcttcttcgatttgggttgaaggttcaatatttcagt |
363 |
Q |
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| T |
19189846 |
aaatgtttcatattatatttgtccttttaaatacttccatgtaatttttattggtaatccttattttcctcca--tgggttgaaggttcaatatttggat |
19189943 |
T |
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| Q |
364 |
cctcctgcaagagttcactatt |
385 |
Q |
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| T |
19189944 |
cctcctgcaagtgttcactatt |
19189965 |
T |
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