View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_13 (Length: 407)
Name: NF7712_low_13
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 35857091 - 35856698
Alignment:
| Q |
1 |
atgacgagcaaacgtaccacacaaagacaaatacacacaaaacacaacttaagttgcactaaagcataaaagaagatagttttaaattgatggatccaaa |
100 |
Q |
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| T |
35857091 |
atgacgagcaaacgtaccgcacaaagacaaatacacacaaaacacaacttaagttgcactaaagcacaaaagaagatagttttaaattgatggatccaaa |
35856992 |
T |
|
| Q |
101 |
accaattcattaacaagtttttgtttgatggacgaattggatggattaatcaatagatgaatattgatgaatcaaatttccacctctacatgtatttatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35856991 |
gccaattcattaacaagtttttgtttgatggacgaattggatggattaatcaatagatgaatattgatgaatcaaatttccacctctacatgtatttatt |
35856892 |
T |
|
| Q |
201 |
caatcgtcatttccacctctacatgtattatttattcagttgtcatttttcttctcgactttatttccagctgaataaataaagca--taaatttcattc |
298 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35856891 |
caatcgtcatttccacctctgcatgtattatttattcagttggcatttttcttctcgactttatttccagctgaataaataaagcatttaaatttcattc |
35856792 |
T |
|
| Q |
299 |
acatcttacacacatttaagtactcnnnnnnncctttctaggattgtaaaaccaaacttttcttccatcaagatcttgtgttggccttgcattt |
392 |
Q |
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| T |
35856791 |
acatcttacacacatttaagtactctttttttcctttctaggattgtaaaaccaaacttttcttccatcaagatcttgtgttggccttgcattt |
35856698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 5496148 - 5496220
Alignment:
| Q |
76 |
atagttttaaattgatggatccaaaaccaattcattaacaagtttt--tgtttgatggacgaattggatggatt |
147 |
Q |
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| T |
5496148 |
atagtttttaatggatggatc-aaatccaatccattaacaattttttttgtttgatggatgaattggatggatt |
5496220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 11674759 - 11674831
Alignment:
| Q |
76 |
atagttttaaattgatggatccaaaaccaattcattaacaagtttt--tgtttgatggacgaattggatggatt |
147 |
Q |
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|||||||| ||| |||||||| ||| ||||| ||||||||| |||| ||||||||||| |||||||||||||| |
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| T |
11674759 |
atagtttttaatggatggatc-aaatccaatccattaacaaatttttttgtttgatggatgaattggatggatt |
11674831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 11683038 - 11683110
Alignment:
| Q |
76 |
atagttttaaattgatggatccaaaaccaattcattaacaagtttt--tgtttgatggacgaattggatggatt |
147 |
Q |
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| T |
11683038 |
atagtttttaatggatggatc-aaatccaatccattaacaaatttttttgtttgatggatgaattggatggatt |
11683110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 34279173 - 34279237
Alignment:
| Q |
76 |
atagttttaaattgatggatccaaaaccaattcattaacaagtttttgtttgatggacgaattgga |
141 |
Q |
| |
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||||||||||||||||| |||| ||| |||| |||||||| ||||| |||| ||||||||||||| |
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| T |
34279173 |
atagttttaaattgatgaatcc-aaatcaatcaattaacaaatttttctttggtggacgaattgga |
34279237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 36874920 - 36874849
Alignment:
| Q |
77 |
tagttttaaattgatggatccaaaaccaattcattaacaa--gtttttgtttgatggacgaattggatggatt |
147 |
Q |
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||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||| | ||||| |||||| |
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| T |
36874920 |
tagttttaaatggatggattcaaa-ccaattcattaacaattttttttgtttgatggatggattgggtggatt |
36874849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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