View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_15 (Length: 401)
Name: NF7712_low_15
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 9788974 - 9788606
Alignment:
| Q |
16 |
atattactaaacttatgccaaacctgaatacaattctttccaagcatgaagtcattaaccatagaaccaaagatatagcttgcttgccacttgcaaagaa |
115 |
Q |
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| T |
9788974 |
atattactaaacttatgccaaacctgaatacaattctttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaagaa |
9788875 |
T |
|
| Q |
116 |
agagctttttagagtaaagtaaggatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9788874 |
agagctttttagagtaaagtaaggatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaa |
9788775 |
T |
|
| Q |
216 |
aaatggttttaaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggaca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9788774 |
aaatggttttaaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatttggaca |
9788675 |
T |
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| Q |
316 |
gaattttggttggaatttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagt |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788674 |
gaattttggttggaatttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagt |
9788606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 139 - 375
Target Start/End: Original strand, 3587547 - 3587782
Alignment:
| Q |
139 |
gatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaaaaatggttttaaagaaat-aaaa |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||| |||| |
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| T |
3587547 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggtttcaaagaaataaaaa |
3587646 |
T |
|
| Q |
238 |
agcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggacagaattttggttggaatttgtct |
337 |
Q |
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| ||||||||||| ||||||||| ||||||| ||||| |||||||||||| | ||||||||||||||||| || ||||||||||||||||||||| | | |
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| T |
3587647 |
accttattcttccttatgtgtgtgtatatat--attaatatgtttgctatagggatagttgtggctctcatttgaacagaattttggttggaatttattt |
3587744 |
T |
|
| Q |
338 |
cctggtttgtggttagagacttgactttgctttctgcg |
375 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
3587745 |
cctggtttatggttagagacttgactttgctttctgcg |
3587782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 140 - 384
Target Start/End: Original strand, 44505350 - 44505594
Alignment:
| Q |
140 |
atttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaaaaatggttttaaagaaataaaaag |
239 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
44505350 |
atttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgttagagaaaaaatggttttaaagaaataaaaac |
44505449 |
T |
|
| Q |
240 |
cttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggacagaattttggttggaatttgtctcc |
339 |
Q |
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||||||||||| ||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44505450 |
cttattcttccttatgtgtgtgtgtatatatattaacatgtttgctatatggatagttgtggctctcatctggacagaattttggttagaatttgtctcc |
44505549 |
T |
|
| Q |
340 |
tggtttgtggttagagacttgactttgctttctgcgtatggtagt |
384 |
Q |
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| T |
44505550 |
tggtttgtggttagagacttgactttgctttctgcgtatggtagt |
44505594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 226 - 384
Target Start/End: Complemental strand, 10013631 - 10013473
Alignment:
| Q |
226 |
aaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggacagaattttggt |
325 |
Q |
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|
||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||||||||||||||| |
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| T |
10013631 |
aaagaaataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggt |
10013532 |
T |
|
| Q |
326 |
tggaatttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagt |
384 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10013531 |
tggaatttgtctcctggtttgtagttagagacttgactttgctttctgcgtatggtagt |
10013473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 226 - 384
Target Start/End: Complemental strand, 10020772 - 10020614
Alignment:
| Q |
226 |
aaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggacagaattttggt |
325 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||||||||||||||| |
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| T |
10020772 |
aaagaaataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggt |
10020673 |
T |
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| Q |
326 |
tggaatttgtctcctggtttgtggttagagacttgactttgctttctgcgtatggtagt |
384 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10020672 |
tggaatttgtctcctggtttgtagttagagacttgactttgctttctgcgtatggtagt |
10020614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 10013746 - 10013647
Alignment:
| Q |
139 |
gatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaaaaatggttttaaagaaataaaaa |
238 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
10013746 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10013647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 10020887 - 10020788
Alignment:
| Q |
139 |
gatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcttcagagaaaaaatggttttaaagaaataaaaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
10020887 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10020788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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