View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_16 (Length: 380)
Name: NF7712_low_16
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 32193653 - 32194016
Alignment:
| Q |
1 |
aagttgggattagaggcagaaatgaaggaaacaaaattgaaatgctaaaatgaaaagacaacaaa-ttaagtaattattttaactttgaaatgtaaaacc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
32193653 |
aagttgggattagaggcagaaatgaaggaaacaaaattgaaatgctaaaatgaaaagacaccaaaattaagtaattattttaactttgaaatgtaaaacc |
32193752 |
T |
|
| Q |
100 |
aatttccaaacattgattcaatcttcgtcgcaagtttcttgctattatgaagagcccaaggtcgaatgtctttccccacatagattttggagaccaccat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32193753 |
aatttccaaacattgattcaatcttcgtcgcaagtttcttgctattatgaagagcccaaggtcgaatgtctttccccacatagattttggagaccaccat |
32193852 |
T |
|
| Q |
200 |
gactacagtggcctccaccgagtgccactgtggacgcaggttttcctgattgttctcggtgtactttttggagtggtggtcattgcactcattgtctatt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32193853 |
gactacagtggcctccaccgagtgccactgtggacgcaggttttcctgattgttctcggtgtactttttggagtggtggtcattgcactcattgtctatt |
32193952 |
T |
|
| Q |
300 |
gggtgatatacccatccttcattcggtggtagtgatcaggagcagtgacacctgagcccactat |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32193953 |
gggtgatatacccatccttcattcggtggtagtgatcaggagcagtgacacttgagcccactat |
32194016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 145 - 357
Target Start/End: Original strand, 32197478 - 32197690
Alignment:
| Q |
145 |
tatgaagagcccaaggtcgaatgtctttccccacatagattttggagaccaccatgactacagtggcctccaccgagtgccactgtggacgcaggttttc |
244 |
Q |
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| T |
32197478 |
tatgaagagcccaaggtcgaatgtccttccccacatatattttagagaccaccatgactatagtggcctccatcgagtgccactgtggacgcaggttctc |
32197577 |
T |
|
| Q |
245 |
ctgattgttctcggtgtactttttggagtggtggtcattgcactcattgtctattgggtgatatacccatccttcattcggtggtagtgatcaggagcag |
344 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| | |||||||||| | |
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| T |
32197578 |
ctgattgttctcggtgtagtttttggagcggtggtcattgcactcattgtctgttgggtgatatacccacccttcattcagtggtggcgatcaggagcgg |
32197677 |
T |
|
| Q |
345 |
tgacacctgagcc |
357 |
Q |
| |
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|| |||||||||| |
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| T |
32197678 |
tggcacctgagcc |
32197690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 37 - 322
Target Start/End: Complemental strand, 41177351 - 41177066
Alignment:
| Q |
37 |
ttgaaatgctaaaatg-aaaagacaacaaattaagtaattattttaactttgaaatgtaaaaccaatttccaaacattgattcaatcttcgtcgcaagtt |
135 |
Q |
| |
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||||||||||||||| |||| ||||||| | || ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |
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| T |
41177351 |
ttgaaatgctaaaatttaaaaaacaacaactcaa-taatttttttaactttgaaatgtaaaaccaatttccaaacactgattcaatcctcgtcgcaggtt |
41177253 |
T |
|
| Q |
136 |
tcttgctattatgaagagcccaaggtcgaatgtctttccccacatagattttggagaccaccatgactacagtggcctccaccgagtgccactgtggacg |
235 |
Q |
| |
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|||| |||||||||||||| |||| ||||| || ||||||| | ||| |||||||||||||| |||||||||| |||||| |||||||| || |||||| |
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| T |
41177252 |
tcttactattatgaagagctcaagaccgaatatccttccccatagagactttggagaccaccacgactacagtgacctccatcgagtgccgctatggacg |
41177153 |
T |
|
| Q |
236 |
caggttttcctgattgttctcggtgtactttttggagtggtggtcattgcactcattgtctattgggtgatatacccatccttcatt |
322 |
Q |
| |
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||| || | || |||||| | ||||| |||| ||||||||| ||| |||| |||| |||| |||||||||||| |||||||| |
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| T |
41177152 |
cagattcttcttattgttttaggtgtgattttcagagtggtggccatccaactctttgtttattatgtgatatacccacccttcatt |
41177066 |
T |
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