View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7712_low_18 (Length: 372)
Name: NF7712_low_18
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_18 |
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| [»] scaffold0248 (1 HSPs) |
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| [»] scaffold0351 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 13995190 - 13995534
Alignment:
| Q |
13 |
aatataattgagtgttggatcagctcggtcgaaattatgattgcatgtgtctacaatataatttatgagtgatgtttaatttacttg-aggttatattat |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13995190 |
aatataattgagtgttggatcagctcggtcgaaattatgattgcatatgtctacaatataatttatgagtgatgtttaatttacttggaggttatattat |
13995289 |
T |
|
| Q |
112 |
tagaattttcgactattctatttcatgatcatgttactataaaaaagaaatattcatgtcaattannnnnnnnnnnngcacattaattttgttgaaaaag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
13995290 |
tagaattttcgactattctatttcatgatcatgttactataaaaaagaaatattcatgtcaattattttttatttttgcacattaattttgttgaaaatg |
13995389 |
T |
|
| Q |
212 |
ttgtttgaattgtataattatcatacctttttctgtttattcttgttaaattccggaagaaattaacatcgaaacatccttgatagattgttcaaacaat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
13995390 |
ttgtttgaattgtataattatcatacctttttctgtttattcttgttaaattccggaagaaattaacattgaagcatccttgatagattgttcaaacaat |
13995489 |
T |
|
| Q |
312 |
gaagttcttttgtgatatagttcttcaagaactatattttctttt |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13995490 |
gaagttcttttgtgatatagttcttcaagaactatattttctttt |
13995534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 345
Target Start/End: Original strand, 17350435 - 17350589
Alignment:
| Q |
189 |
gcacattaattttgttgaaaaagttgtttgaattgtataattatcatacctttttctgtttattcttgttaaattccggaagaaattaacatcgaaacat |
288 |
Q |
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|||||| |||||||||||||||||| ||| | || |||||||||||| || ||| |||||| |||||||||||| |||||| | |||| ||| ||| |
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| T |
17350435 |
gcacataaattttgttgaaaaagttctttaactt--ataattatcatatctattttcctttatttttgttaaattccagaagaattcaacaatgaatcat |
17350532 |
T |
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| Q |
289 |
ccttgatagattgttcaaacaatgaagttcttttgtgatatagttcttcaagaacta |
345 |
Q |
| |
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|| ||| ||| ||||||||||||||| | |||| ||||||||||||| |||||||| |
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|
| T |
17350533 |
ccatgaaggatagttcaaacaatgaagatattttatgatatagttcttgaagaacta |
17350589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 344
Target Start/End: Complemental strand, 51699833 - 51699675
Alignment:
| Q |
189 |
gcacattaattttgttgaaaaagttgtttgaattgtataattatcatacctttttctgttt----attcttgttaaattccggaagaaattaacatcgaa |
284 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||||||||||||| ||| | |||| ||| | |||||||| ||||||| ||||||| ||| |
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| T |
51699833 |
gcacatgaattttgttgaaat-gttctttgaattgtataattatcatatttttatttgttatttaattttagttaaattttggaagaatttaacattgaa |
51699735 |
T |
|
| Q |
285 |
acatccttgatagattgttcaaacaatgaagttcttttgtgatatagttcttcaagaact |
344 |
Q |
| |
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||||| ||| ||||| | ||||||||||| | | || ||||||||||||| ||||||| |
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| T |
51699734 |
gcatccatgaaggattgcttaaacaatgaagatatcttatgatatagttcttgaagaact |
51699675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 13922032 - 13922375
Alignment:
| Q |
13 |
aatataattgagtgttggatcagctcggtcgaaattatgattgcatgtgtctacaatataatttatgagtgatgtttaatttacttg-aggttatattat |
111 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
13922032 |
aatataattgagtgttggatcagctacgttgaaattatgattgcgtgtgtctaaaatataatttatgagtgatgtttaatttacttggagattatattat |
13922131 |
T |
|
| Q |
112 |
tagaattttcgactattctatttcatgatcatgttactataaaaaagaaatattcatgtcaattannnnnnnnnnnngcacattaattttgttgaaaaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
13922132 |
tagaattttcgactattctatttcatgatcatgttactataaaaaaaaaat---catgtcagttattttttatttttgcacattaattttgttgaaaaag |
13922228 |
T |
|
| Q |
212 |
ttgtttgaattgtataattatcatacctttttctgtttattcttgttaaattccggaagaaattaacatcgaaacatccttgatagattgttc--aaaca |
309 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
13922229 |
ttgtttgaattgtataattatcatttctttttctgtttattcttgttaaattccggaagaaattaacattgaagcatccttgatagattgttcttaaaca |
13922328 |
T |
|
| Q |
310 |
atgaagttcttttgtgatatagttcttcaagaactatattttctttt |
356 |
Q |
| |
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|||||||||||||||||||||||| || |||| ||||||||| |||| |
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|
| T |
13922329 |
atgaagttcttttgtgatatagttattgaagatctatattttttttt |
13922375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 7106542 - 7106447
Alignment:
| Q |
189 |
gcacattaattttgttgaaaaagttgtttgaattgtataattatcatacctttttctgtttattcttgttaaattccggaagaaattaacatcgaa |
284 |
Q |
| |
|
|||||| |||||||||||||||||||||| | || ||||||||||||| ||| ||||||| | ||||||||||| |||||| |||||| |||| |
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| T |
7106542 |
gcacataaattttgttgaaaaagttgtttcacttctataattatcatatcttccattgtttatccctgttaaattccagaagaatttaacaccgaa |
7106447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 7873240 - 7873133
Alignment:
| Q |
248 |
ttattcttgttaaattccggaagaaattaacatcgaaacatccttgatagattgttcaaacaatgaagttcttttgtgatatagttcttcaagaactata |
347 |
Q |
| |
|
|||||||| ||||||| |||||||| ||||||| ||| | |||| || ||||||||||| ||||||| | |||| |||||||||||| ||||||||| |
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|
| T |
7873240 |
ttattctttttaaatttcggaagaatttaacattgaagcgtcct-gaaggattgttcaaataatgaagatattttatgatatagttctcgaagaactatt |
7873142 |
T |
|
| Q |
348 |
ttttctttt |
356 |
Q |
| |
|
|||| |||| |
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|
| T |
7873141 |
ttttttttt |
7873133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 351
Target Start/End: Original strand, 16996 - 17101
Alignment:
| Q |
247 |
tttattcttgttaaattccggaagaaattaacatc-gaaacatccttgatagattgttcaaacaatgaagttcttttgtgatatagttcttcaagaacta |
345 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| || ||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
16996 |
tttatttttgttaaattccggaagaatttaatatttgaagtatccttgaaggattgtttaaacaatgaagttcttttgtgatatagttcttgaagaacta |
17095 |
T |
|
| Q |
346 |
tatttt |
351 |
Q |
| |
|
|||||| |
|
|
| T |
17096 |
tatttt |
17101 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 28201346 - 28201283
Alignment:
| Q |
198 |
ttttgttgaaaaagttgtttgaattgtataattatcatacctttttctgtttattcttgttaaa |
261 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||| |||| | ||||||||| ||||||| |
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|
| T |
28201346 |
ttttgttgaaaaagttatttgacttgtataattatcatatctttctttgtttattcctgttaaa |
28201283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 357
Target Start/End: Complemental strand, 5370 - 5215
Alignment:
| Q |
203 |
ttgaaaaagttgtttgaattgtataattatcatacctttttctgtttattcttgttaaattccggaa-gaaattaacatcgaaacatccttgatagattg |
301 |
Q |
| |
|
|||| |||||| | ||| |||||| |||||||| ||| | ||||||||||||| ||||| |||| ||| ||||||| ||| ||||| ||| ||||| |
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|
| T |
5370 |
ttgagaaagttctatgacttgtatggttatcatatatttctttgtttattcttgtcaaattttggaaagaatttaacattgaagcatccctgaaggattg |
5271 |
T |
|
| Q |
302 |
ttcaaacaatgaagttcttttgtgatatagttcttcaagaactatattttcttttt |
357 |
Q |
| |
|
||||||||||||| | |||| | |||||||||| ||||||||| ||||| |||| |
|
|
| T |
5270 |
ctcaaacaatgaagatattttattatatagttctcaaagaactattttttcctttt |
5215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 357
Target Start/End: Original strand, 114975 - 115134
Alignment:
| Q |
198 |
ttttgttgaaaaagttgtttgaattgtataattatcatacctttttctgtttattcttgttaaattccggaagaaattaacatcgaaacatccttgatag |
297 |
Q |
| |
|
|||| |||| |||||| | ||| |||||| |||||||| ||| | ||||||||||| | ||||| ||||||| ||||||| ||| ||| ||| | |
|
|
| T |
114975 |
tttttttgagaaagttctatgacttgtatggttatcatatatttctttgtttattcttttcaaattttggaagaatttaacattgaagtatctctgaagg |
115074 |
T |
|
| Q |
298 |
attgttcaaacaatgaagttcttttgtgatatagttcttcaagaactatattttcttttt |
357 |
Q |
| |
|
|||| ||||||||||||| | |||| |||||||||||| ||||||||| ||||| |||| |
|
|
| T |
115075 |
attgctcaaacaatgaagatattttatgatatagttctcgaagaactattttttcctttt |
115134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 21154693 - 21154791
Alignment:
| Q |
247 |
tttattcttgttaaattccggaagaaattaacatcgaaacatccttgatagattgttcaaacaatgaagttcttttgtgatatagttcttcaagaacta |
345 |
Q |
| |
|
|||||| |||||||||||| |||||| | |||| | || ||||| ||| ||| ||||||||||||||| | |||| ||||| ||||||| |||||||| |
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|
| T |
21154693 |
tttatttttgttaaattccagaagaattcaacaacaaatcatccctgaaggatagttcaaacaatgaagatattttatgatacagttcttgaagaacta |
21154791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 21161828 - 21161926
Alignment:
| Q |
247 |
tttattcttgttaaattccggaagaaattaacatcgaaacatccttgatagattgttcaaacaatgaagttcttttgtgatatagttcttcaagaacta |
345 |
Q |
| |
|
|||||| |||||||||||| |||||| | |||| | || ||||| ||| ||| ||||||||||||||| | |||| ||||| ||||||| |||||||| |
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|
| T |
21161828 |
tttatttttgttaaattccagaagaattcaacaacaaatcatccctgaaggatagttcaaacaatgaagatattttatgatacagttcttgaagaacta |
21161926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 9861 - 9903
Alignment:
| Q |
303 |
tcaaacaatgaagttcttttgtgatatagttcttcaagaacta |
345 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
9861 |
tcaaacaatgaagatctcttgtgatatagttcttgaagaacta |
9903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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