View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_2 (Length: 661)
Name: NF7712_low_2
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 11 - 649
Target Start/End: Complemental strand, 1427166 - 1426525
Alignment:
| Q |
11 |
agtttggtggtgtttgtggtgaagttataccaattaccagtaagcttttgaaacaattgtgatgtaaatgtcatttctaatcaatcaaccaaatgctcat |
110 |
Q |
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| T |
1427166 |
agtttagtggtgtttgtggtgaagttataccaattaccagtaagcttttgaaacaattgtgatgttaatgtcatttctaatcaatcaaccaaaagctcat |
1427067 |
T |
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| Q |
111 |
atccttacaatgttctttaccgaccacttcgtttttatataatgttatgtaggttcttactattactataatgttcttttaatt---cttcttctataag |
207 |
Q |
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| T |
1427066 |
atccttacaatgttctttaccgaccactccgtttttatataatgttatgtaggttcttactattactataatgttcttttaatttttcttcttctataag |
1426967 |
T |
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| Q |
208 |
tatttttaaaaagtttattcaagttgtctccttagatgttttggtgttctggtcgtcctaactctggttaacttcaaaatttcagtataaatgccatgga |
307 |
Q |
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| T |
1426966 |
tatttttaagaagtttattcaagttgtctccttagatgttttggtcttctggtcgtcctaactctggttaacttcaaaatttcagtataaatgccatgga |
1426867 |
T |
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| Q |
308 |
ccccaagacaagaaagatcttgcaactatttcgattgagacaggtaatatttgttttcatcggatactgatatctcctcattttaagttgttaggttttg |
407 |
Q |
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| T |
1426866 |
ccccaagacaagaaagatcttgcaactatttcgattgagacaggtaatatttgttttcatcggatactgatatctcctcattttaagttgttaggttttg |
1426767 |
T |
|
| Q |
408 |
aagaaattgccttgttgtgtttctggttgggtaatacaattgtaacacattgaatgttctttgagggagtctatgatgcgtatagcattttaaaacaact |
507 |
Q |
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| T |
1426766 |
aagaaattgccttgttgtgtttctggttgggtaatacaattgtaacacattgaatgttctttgagggagtctatgatgcgtatagcattttaaaacaact |
1426667 |
T |
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| Q |
508 |
gtatagtgcatatttctgttggtataaaagcagtttggtgatccttatgtttttgcttgacagattttcaatggtgttttccttaaagttaacaaagcaa |
607 |
Q |
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| T |
1426666 |
gtatagtgcatatttctgttggtataaaagcagtttggtgatccttatgtttttgcttgacagattttcaatggtgttttccttaaagttaacaaagcaa |
1426567 |
T |
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| Q |
608 |
caatgaacatgttgcacagggttgagccttatgtgacttatg |
649 |
Q |
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| T |
1426566 |
caatgaacatgttgcacagggttgagccttatgtgacttatg |
1426525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 582 - 649
Target Start/End: Original strand, 49167292 - 49167359
Alignment:
| Q |
582 |
tgttttccttaaagttaacaaagcaacaatgaacatgttgcacagggttgagccttatgtgacttatg |
649 |
Q |
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| T |
49167292 |
tgttttccttgaagttaacaaagcaacaatgaacatgttgcacaaggttgagccttatgtaacttatg |
49167359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 641
Target Start/End: Complemental strand, 7105873 - 7105800
Alignment:
| Q |
568 |
cagattttcaatggtgttttccttaaagttaacaaagcaacaatgaacatgttgcacagggttgagccttatgt |
641 |
Q |
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| T |
7105873 |
cagatctttaatggtgtctttctcaaagttaacaaagcaaccgtgaacatgctccacagggttgagccttatgt |
7105800 |
T |
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