View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_21 (Length: 346)
Name: NF7712_low_21
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 137 - 335
Target Start/End: Original strand, 23674820 - 23675020
Alignment:
| Q |
137 |
ttgttcaaatttcaaattgcatccgtttgcagtcacttattcaattgacgcaatcggaatacctcttgc-ttctataatta--atttccttgaatattgc |
233 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||| |||| ||| || ||||||||||||||||| |
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| T |
23674820 |
ttgttcaaatttcaaattgtatccgtttgcagtcacttattcaattgatgcaattggaatatctcttgccttctgtaactataatttccttgaatattgc |
23674919 |
T |
|
| Q |
234 |
ttcaatattagtctcacggttataagaaaaatgtattggttcatagatctccaagtgcaatccattgttaccacaaacaatgttatttccccttgttgag |
333 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
23674920 |
ttcaatattagtctcacggttataagaagaatgtattggttcctagatcttcaaatgc-atccattgttaccacaaacaatgttatttcccgttgttgag |
23675018 |
T |
|
| Q |
334 |
aa |
335 |
Q |
| |
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|| |
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| T |
23675019 |
aa |
23675020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 137 - 335
Target Start/End: Complemental strand, 23859991 - 23859791
Alignment:
| Q |
137 |
ttgttcaaatttcaaattgcatccgtttgcagtcacttattcaattgacgcaatcggaatacctcttgc-ttctataatta--atttccttgaatattgc |
233 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||| |||| ||| || ||||||||||||||||| |
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| T |
23859991 |
ttgttcaaatttcaaattgtatccgtttgcagtcacttattcaattgatgcaattggaatatctcttgccttctgtaactataatttccttgaatattgc |
23859892 |
T |
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| Q |
234 |
ttcaatattagtctcacggttataagaaaaatgtattggttcatagatctccaagtgcaatccattgttaccacaaacaatgttatttccccttgttgag |
333 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
23859891 |
ttcaatattagtctcacggttataagaagaatgtattggttcctagatcttcaaatgc-atccattgttaccacaaacaatgttatttcccgttgttgag |
23859793 |
T |
|
| Q |
334 |
aa |
335 |
Q |
| |
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|| |
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|
| T |
23859792 |
aa |
23859791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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