View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_22 (Length: 346)
Name: NF7712_low_22
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 328
Target Start/End: Complemental strand, 9378746 - 9378427
Alignment:
| Q |
9 |
agcagagaagcaacaaaacagccacagggaacccaaagaaaaaccaagaattgaagcttattggttttgcttcaggggcaaggcttttccacattccaat |
108 |
Q |
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| T |
9378746 |
agcagagaagcaacaaaacagccacagggaacccaaagaaaaaccaagaattgaagcttattggttttgcttcaggggcaaggcttttccacattccaat |
9378647 |
T |
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| Q |
109 |
tattatcaagttcacacctgttcctgttagagtgcttatacctccaattggtgtagcatacaccactgttagaatcactgctctactaaacttgttcatt |
208 |
Q |
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| T |
9378646 |
tattatcaagttcacacctgttcctgttagagtgcttatccctccaattggtgtagcatacaccactgttagaatcactgctctactgaacttgttcatt |
9378547 |
T |
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| Q |
209 |
aattctggctgctcctccgctggtggtagccggtgtaggattccggttgctaccggcatcatcataaccgctgttgccacattgtgtaaccacatgctca |
308 |
Q |
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| T |
9378546 |
aattctggctgctcctccgctggtggtagccggtgtaggattccggttgctaccggcatcatcataaccgctgttgccacattgtgtaaccacatgctca |
9378447 |
T |
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| Q |
309 |
cgaaaaatgtggttgcacat |
328 |
Q |
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| T |
9378446 |
cgaaaaatgtggttgcacat |
9378427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 55737243 - 55737079
Alignment:
| Q |
42 |
caaagaaaaaccaagaattgaagcttattggttttgcttcaggggcaaggcttttccacattccaattattatcaagttcacacctgttcctgttagagt |
141 |
Q |
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| T |
55737243 |
caaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaagactcttccacattccaatcaatatcaaatttacacctgtccctgtcaaagt |
55737144 |
T |
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| Q |
142 |
gcttatacctccaattggtgtagcatacaccactgttagaatcactgctctactaaacttgttca |
206 |
Q |
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| T |
55737143 |
gctcattcctccaattggaaccgcataaaccactgtcagaaccaccgctctgctgaacttattca |
55737079 |
T |
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