View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7712_low_25 (Length: 312)

Name: NF7712_low_25
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7712_low_25
NF7712_low_25
[»] chr3 (2 HSPs)
chr3 (18-301)||(25601765-25602048)
chr3 (20-301)||(25596962-25597252)
[»] chr4 (8 HSPs)
chr4 (107-247)||(36636745-36636885)
chr4 (18-247)||(36643440-36643669)
chr4 (134-237)||(36613165-36613268)
chr4 (107-192)||(36668463-36668548)
chr4 (107-215)||(35968458-35968566)
chr4 (180-247)||(36909764-36909831)
chr4 (18-83)||(18364261-18364326)
chr4 (18-83)||(36598599-36598664)
[»] chr5 (2 HSPs)
chr5 (108-237)||(19658151-19658280)
chr5 (108-237)||(19674990-19675119)
[»] chr1 (1 HSPs)
chr1 (35-199)||(42602730-42602894)
[»] chr6 (2 HSPs)
chr6 (107-145)||(33840185-33840223)
chr6 (107-169)||(33844153-33844215)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 25601765 - 25602048
Alignment:
Q  18 caagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagatttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25601765 caagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcgtctctaagatttt 25601864  T
Q  118 gactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25601865 gactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaacatccagcctcgactcctcaaaaagattttaaagtatgtttcc 25601964  T
Q  218 tctcataattcccaactccacgaattaggagtctatgttaggggtgataatgatctcattctccaatgtgtttcttcatctcac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  25601965 tctcataattcccaactccacgaattaggagtctatgttaggggtgatagtgatctcattctccaatgtgtttcttcatgtcac 25602048  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 25596962 - 25597252
Alignment:
Q  20 agatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttga 119  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||| |  |||||| ||||||||  ||| |||| |  ||| | | ||||||||||| |    
T  25596962 agatggaagaatctttggaaacatattcccacccttatattgcattgccttgaattccccactatggagaattttacctcatccgtatctaagattttaa 25597061  T
Q  120 ctcttcgtgatagctcagcttcattgaatgctcttgatcttga---------ctgtgatggtaatatccagcctcgactcctcaaaaagattttaaagta 210  Q
    |||||||||||||| || ||||| || ||||||||||||||||         || |||||||||||||| | ||  ||||||||||||||| ||| | ||    
T  25597062 ctcttcgtgatagcacaacttcactgcatgctcttgatcttgaccgtacaccctatgatggtaatatcccgtctgaactcctcaaaaagatattagacta 25597161  T
Q  211 tgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgataatgatctcattctccaatgtgtttcttcatctcac 301  Q
    |||||| |||||||||||||| || |  ||||||||| ||| |||||||||||||| || ||||||||| || ||||||||||||| ||||    
T  25597162 tgtttcttctcataattcccaccttcgggaattaggaatctctgttaggggtgatagtggtctcattcttcattgtgtttcttcatgtcac 25597252  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 36636885 - 36636745
Alignment:
Q  107 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 206  Q
    ||||| || |||||||||||||||| |||| || || || | ||||||||||||||| || ||||||| ||  |||||| |||||| |||||||||||||    
T  36636885 tctaacatattgactcttcgtgatacctcaactgcactgcacgctcttgatcttgaccgtcatggtaacattgagcctcaactccttaaaaagattttaa 36636786  T
Q  207 agtatgtttcctctcataattcccaactccacgaattagga 247  Q
    | ||||||||||| |||||| |||| ||||| || ||||||    
T  36636785 actatgtttcctcccataatacccacctccaggatttagga 36636745  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 36643669 - 36643440
Alignment:
Q  18 caagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagatttt 117  Q
    ||||||||||| ||||||||  ||||||||| ||||||||||| ||||||||  | ||| | ||| | ||||  |||||   |||| | ||||| |||||    
T  36643669 caagatggaagcatctttgggcacgtattcctacccttatattacattcctcaaacttttcaactgtcaagaaatttgccatattcgtgtctaacatttt 36643570  T
Q  118 gactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcc 217  Q
    |||||||||  |||||||| ||||  || | |||||  |||||||  ||  |||| ||||  | |||| |||||| |||||||||||||| ||| ||| |    
T  36643569 gactcttcgcaatagctcaacttctctgcaagctctcaatcttgatcgtcgtggtgatattgaacctcaactccttaaaaagattttaaattatatttgc 36643470  T
Q  218 tctcataattcccaactccacgaattagga 247  Q
    || |||||| |||| |||||||||||||||    
T  36643469 tcccataatacccacctccacgaattagga 36643440  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 36613268 - 36613165
Alignment:
Q  134 tcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaac 233  Q
    |||||| ||||| |||| |||||| ||||||||   ||||||||  |||||||| |||| ||||||||||| || |||||||||||  ||||| |||| |    
T  36613268 tcagctgcattggatgcccttgattttgactgtagaggtaatattgagcctcgaatccttaaaaagattttgaattatgtttcctcagataatacccacc 36613169  T
Q  234 tcca 237  Q
    ||||    
T  36613168 tcca 36613165  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 36668548 - 36668463
Alignment:
Q  107 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcct 192  Q
    |||||||||||||||||||||||||||||| || |||||   | ||||||| ||||| || |||||||| |  | |||||||||||    
T  36668548 tctaagattttgactcttcgtgatagctcaactgcattgcgcgttcttgatgttgaccgtaatggtaattttgaacctcgactcct 36668463  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 35968458 - 35968566
Alignment:
Q  107 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 206  Q
    ||||||||||||||||||||||||| ||||  | || || | ||||||||| ||||| || ||||||||||  || ||| ||||||  ||||| |||||     
T  35968458 tctaagattttgactcttcgtgatacctcaattccactgcaagctcttgatattgaccgtcatggtaatattgagtctcaactccttgaaaaggttttag 35968557  T
Q  207 agtatgttt 215  Q
    | |||||||    
T  35968558 actatgttt 35968566  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 36909764 - 36909831
Alignment:
Q  180 agcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga 247  Q
    |||||| |||||| |||||||||||||| |||||| | || |||||| |||| ||||| |||||||||    
T  36909764 agcctcaactccttaaaaagattttaaactatgttacttcccataatacccacctccatgaattagga 36909831  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 18364261 - 18364326
Alignment:
Q  18 caagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccacta 83  Q
    ||||||||||  ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||    
T  18364261 caagatggaaacatctttggaaacgcattccaactcttatgttgcattcctcagacttttccacta 18364326  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 36598664 - 36598599
Alignment:
Q  18 caagatggaagtatctttggaaacgtattcccacccttatattgcattcctctgaatttcccacta 83  Q
    ||||||||||  ||||||||||||| ||||| || ||||| ||||||||||| || ||| ||||||    
T  36598664 caagatggaaacatctttggaaacgcattccaactcttatgttgcattcctcagacttttccacta 36598599  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 19658280 - 19658151
Alignment:
Q  108 ctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaa 207  Q
    |||||||||||||||||||||||| ||||  ||||||| | || |||||||||||| || ||||| ||||  |||||||| |||| |||||||||||| |    
T  19658280 ctaagattttgactcttcgtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttaga 19658181  T
Q  208 gtatgtttcctctcataattcccaactcca 237  Q
     ||||||| ||| |||||| |||| |||||    
T  19658180 ttatgtttgctcacataatacccacctcca 19658151  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 19675119 - 19674990
Alignment:
Q  108 ctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaa 207  Q
    |||||||||||||||||||||||| ||||  ||||||| | || |||||||||||| || ||||| ||||  |||||||| |||| |||||||||||| |    
T  19675119 ctaagattttgactcttcgtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttaga 19675020  T
Q  208 gtatgtttcctctcataattcccaactcca 237  Q
     ||||||| ||| |||||| |||| |||||    
T  19675019 ttatgtttgctcacataatacccacctcca 19674990  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 199
Target Start/End: Complemental strand, 42602894 - 42602730
Alignment:
Q  35 tggaaacgtattcccacccttatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagct 134  Q
    |||||||||||||| || ||||||||| |||||||  | ||||||||| | |||  |||| |   |||  | ||||||||||||||||||||||||| ||    
T  42602894 tggaaacgtattcctactcttatattggattcctcaaactttcccactgtgaagcatttttccatatttgtgtctaagattttgactcttcgtgatacct 42602795  T
Q  135 cagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaag 199  Q
    || || || || |||||||||||||| || || |||||| |||  |||| | |||||| ||||||    
T  42602794 caactgcactgcatgctcttgatcttcaccgtcatggtagtattgagccgcaactccttaaaaag 42602730  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 33840223 - 33840185
Alignment:
Q  107 tctaagattttgactcttcgtgatagctcagcttcattg 145  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  33840223 tctaagattttgactcttcgtgataactcagctgcattg 33840185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 33844215 - 33844153
Alignment:
Q  107 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgat 169  Q
    ||||||||||||||||||||||||| ||||||| || || ||  ||||||| |||| ||||||    
T  33844215 tctaagattttgactcttcgtgataactcagctgcactgcatattcttgattttgagtgtgat 33844153  T

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