View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_26 (Length: 308)
Name: NF7712_low_26
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_26 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 11312384 - 11312663
Alignment:
| Q |
29 |
aagaataatcatacctgtaccagcaatcaacagcttcatgattcaattttatgcaaatttgacaagcacttttactctcgttgatttgacgtggcttttc |
128 |
Q |
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| T |
11312384 |
aagaataatcatacctgtaccagcaatcaacagcttcatgattcggttttctgcaaatttgacaagcacttttactctcgttgttttgacgtggcttttc |
11312483 |
T |
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| Q |
129 |
tccctttgaactgtggttatgcttgacgaagacctcgttgttttgaggtccattatatcgacctactggagtaaaacctcttccttgagagttaaagtga |
228 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11312484 |
tccctttgaactgtggttatgcttgacagagaactcgttgttttgaggtccattatatcgacctgctggagtaaaacctcttccttgagagttaaagtga |
11312583 |
T |
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| Q |
229 |
cctctaccgccaagtccgcttcgacctcgacctcttcctctttgactaaagaaagcttgagcatgctctattaagctctt |
308 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11312584 |
cctctaccgccacgtccgcttcgacctcgacctcttcctctttgactaaagaaagcttgagcatgctctattaagctctt |
11312663 |
T |
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