View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7712_low_28 (Length: 298)

Name: NF7712_low_28
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7712_low_28
NF7712_low_28
[»] chr2 (8 HSPs)
chr2 (11-280)||(31294690-31294959)
chr2 (182-274)||(31257674-31257766)
chr2 (192-251)||(31309976-31310035)
chr2 (195-279)||(31416524-31416608)
chr2 (200-275)||(31362453-31362528)
chr2 (187-234)||(31376627-31376674)
chr2 (194-234)||(31283487-31283527)
chr2 (200-266)||(31388930-31388996)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 31294690 - 31294959
Alignment:
Q  11 agaatattgatttcactttcaaatcttactgactgaaagagataccaacattattgatgtataactataagtaccagttaagtttgttacatggtattaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31294690 agaatattgatttcactttcaaatcttactgactgaaagagataccaacattattgatgtataactataagtaccagttaagtttgttacatggtattaa 31294789  T
Q  111 ccgatctaactcatgcttatcaatgaagataaatatcaaatcagttgccatagtagtacttacagaacagagtcaattccgcggaaaatagacttacatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31294790 ccgatctaactcatgcttatcaatgaagataaatatcaaatcagttgccatagtagtacttacagaacagagtcaattccgcggaaaatagacttacatt 31294889  T
Q  211 tcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgttctctacgatattca 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31294890 tcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgttctctacgatattca 31294959  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 31257674 - 31257766
Alignment:
Q  182 gtcaattccgcggaaaatagacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgttctctacga 274  Q
    |||||||||  ||||||||||||||||||  |||||||||||||||||||||| ||| || |||||||||||| |||||||||||| ||||||    
T  31257674 gtcaattccatggaaaatagacttacattgaaacaacatggcagaagttgtcaccagcaacactgcagttgcaggtgacattgttcactacga 31257766  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 31309976 - 31310035
Alignment:
Q  192 cggaaaatagacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagtt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||    
T  31309976 cggaaaatagacttacatttcaacaacatggcagaagttgtcatcagcaacactgcagtt 31310035  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 31416608 - 31416524
Alignment:
Q  195 aaaatagacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgttctctacgatattc 279  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| || |  |||||| ||| | |||||||||||||||| ||||    
T  31416608 aaaagagacttacatttcaacaacatggcagaagttgtcaccagcaacagagcagttacaaattacattgttctctacgacattc 31416524  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 31362453 - 31362528
Alignment:
Q  200 agacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgttctctacgat 275  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||  |||||  || |||||||| |||||||||||    
T  31362453 agacttacattgcaacaacatggcagaagttgtcaccaggaatagagcagtcacaggtgacattattctctacgat 31362528  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 31376627 - 31376674
Alignment:
Q  187 ttccgcggaaaatagacttacatttcaacaacatggcagaagttgtca 234  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||    
T  31376627 ttccgcagaaaagagacttacatttcaacaacatggcaaaagttgtca 31376674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 31283487 - 31283527
Alignment:
Q  194 gaaaatagacttacatttcaacaacatggcagaagttgtca 234  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  31283487 gaaaagagacttacatttcaacaacatggcaaaagttgtca 31283527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 31388930 - 31388996
Alignment:
Q  200 agacttacatttcaacaacatggcagaagttgtcagcagaaatactgcagttgcaagtgacattgtt 266  Q
    |||||||||||  |||||||||||||||||||||| | | || |  ||||||||| |||||||||||    
T  31388930 agacttacattgaaacaacatggcagaagttgtcaccggcaacagagcagttgcaggtgacattgtt 31388996  T

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