View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_29 (Length: 297)
Name: NF7712_low_29
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 55455892 - 55456160
Alignment:
| Q |
16 |
caccaacattaccttccatgtccacctgcatcaaaaggtgaaagaaaatctacagaagcattaaaggtaggactagcttgagcaccagcagagaaatatt |
115 |
Q |
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| T |
55455892 |
caccaacattaccttccatgtccacctgcatcaaaaggtgaaagaaaatccacagaagcatcaaaggtaggactagcttgagcaccagcagagaaatatt |
55455991 |
T |
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| Q |
116 |
-agctgaaataatctttccattgcaagaaccaggtgggaaatgtggaccagtctcacaagcaccagaaaagtgagagatatttgaagtgaaaggttggta |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55455992 |
tagctgaaataatctttccattgcaagaaccaggtgggaaatgtggaccagtctcacaagcaccagaaaagtgagagatatttgaagtgaaaggttggta |
55456091 |
T |
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| Q |
215 |
agcaaagcttggatgaattggattaatgccactatcaacaataccaataacaattccatcacctgcatt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55456092 |
agcaaagcttggatgaattggattaatgccactatcaacaataccaataacaattccatcacctgcatt |
55456160 |
T |
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