View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_3 (Length: 661)
Name: NF7712_low_3
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 15 - 479
Target Start/End: Original strand, 36808328 - 36808790
Alignment:
| Q |
15 |
cagagaatggaacagaacccgttgaagatcttgtgacgtacttctctaagcatgacgattccgactttccttattacggcaaatgtggtaattttgagta |
114 |
Q |
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| T |
36808328 |
cagagaatggaacagaacccgttgaagatcttgtgacgtacttctctaagcatgacgattccgactttccatattacggcaaacgtggtaattttgagta |
36808427 |
T |
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| Q |
115 |
taagaatgaggcatataggaagcttgaggctcaaattcaaatatataaggagaagtctcacaacctaagtgtacgcatctatctaactgctaggagtgaa |
214 |
Q |
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| T |
36808428 |
taagaatgaggcatataggaagca--aggctcaaattcaaatatataaggagaagtctcacaacctaagtgtacgcatctatctaactgctaggagtgaa |
36808525 |
T |
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| Q |
215 |
caaaattgaattgcaannnnnnnnattgatggtgaatttagctttggaaaagattttgatttacatgaaaacctttgtccattacatggtatttatattt |
314 |
Q |
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| T |
36808526 |
caaaattgaattgcaattttttttattgatggtgaatttagctttggaaaagattttgatttacatgaaaacctttgtccattacatggtatttatattt |
36808625 |
T |
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| Q |
315 |
tgaaatcatatactggcttgcacaagttttggtgatttgagaaattttatttactttaaaatatttgtatagttgttccttataattttttaagtaagtt |
414 |
Q |
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| T |
36808626 |
tgaaatcatatactggcttgcacaagttttggtgatttgagaaattttatttactttaaaatatttgtatagttgttccttataatttttgaagtaagtt |
36808725 |
T |
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| Q |
415 |
gacatgaggtattatcgagaaatttattaaatgaaaatgtttgtatgattataatcatattgtga |
479 |
Q |
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| T |
36808726 |
gacatgaggtattatcgagaaatttattaaatgaaaatgtttgtatgattataatcatattgtga |
36808790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 477 - 643
Target Start/End: Original strand, 36808811 - 36808977
Alignment:
| Q |
477 |
tgaaagatcgcatttgaatggttattttgggatgaaagttgattgagaatcaaaatggctatggctagatgtatgatattgtggttgcttcaaatatgct |
576 |
Q |
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| T |
36808811 |
tgaaagatcgcatttgaatggttattttgggatgaaagttgattgagaatcaaaatggctatggctagatgtatgatattgtggttgcttcaaatatgct |
36808910 |
T |
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| Q |
577 |
ggtctgattactgagtatacaacacttggattaatatttcaggatatgattgagtattttttggttg |
643 |
Q |
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| T |
36808911 |
ggtctgattaccgagtatacaacacttggattaatatttcaggatatgattgagtattttttggttg |
36808977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 36512438 - 36512295
Alignment:
| Q |
56 |
ttctctaagcatgacgattccgactttccttattacggcaaatgtggtaattttgagtataagaatgaggcatataggaagcttgaggctcaaattcaaa |
155 |
Q |
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| T |
36512438 |
ttctctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaa |
36512339 |
T |
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| Q |
156 |
tatataaggagaagtctcacaacctaagtgtacgcatctatcta |
199 |
Q |
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| T |
36512338 |
tctataaggagaagtctcgcaacctaagtgtacgcatctatcta |
36512295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 36511456 - 36511377
Alignment:
| Q |
288 |
tttgtccattacatggtatttatattttgaaatcatatactggcttgcacaagttttggtgatttgagaaattttattta |
367 |
Q |
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| T |
36511456 |
tttgtccattacatggtatttatattttgaaatcacatgttgacatgcacaagttttggtgatttgagaaattttattta |
36511377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 410 - 469
Target Start/End: Original strand, 33450276 - 33450335
Alignment:
| Q |
410 |
aagttgacatgaggtattatcgagaaatttattaaatgaaaatgtttgtatgattataat |
469 |
Q |
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| T |
33450276 |
aagttgacatgaggttttattgagaaatttatgaaatgaaaatgtttataagattataat |
33450335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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