View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7712_low_30 (Length: 297)

Name: NF7712_low_30
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7712_low_30
NF7712_low_30
[»] chr6 (25 HSPs)
chr6 (40-280)||(2891276-2891518)
chr6 (40-104)||(11062384-11062448)
chr6 (1-41)||(2890882-2890922)
chr6 (40-90)||(2720546-2720596)
chr6 (40-104)||(9352161-9352225)
chr6 (40-104)||(16520067-16520131)
chr6 (40-104)||(17851017-17851081)
chr6 (40-104)||(17851473-17851537)
chr6 (40-104)||(21312070-21312134)
chr6 (40-104)||(28780209-28780273)
chr6 (42-104)||(13492888-13492950)
chr6 (41-103)||(33774986-33775048)
chr6 (41-85)||(2890823-2890867)
chr6 (40-104)||(7912409-7912473)
chr6 (40-104)||(13492431-13492495)
chr6 (40-104)||(20126165-20126229)
chr6 (40-104)||(20850420-20850484)
chr6 (55-104)||(3652585-3652634)
chr6 (40-93)||(17205448-17205501)
chr6 (1-38)||(21312037-21312074)
chr6 (56-104)||(7911977-7912025)
chr6 (40-104)||(13191496-13191560)
chr6 (40-104)||(17027514-17027578)
chr6 (40-104)||(20735794-20735858)
chr6 (40-104)||(23986300-23986364)
[»] chr5 (21 HSPs)
chr5 (40-104)||(10927386-10927450)
chr5 (40-104)||(10926929-10926993)
chr5 (40-104)||(39147038-39147102)
chr5 (40-104)||(1822005-1822069)
chr5 (42-104)||(20039460-20039521)
chr5 (40-104)||(2193915-2193979)
chr5 (40-104)||(2474058-2474122)
chr5 (40-104)||(2474504-2474568)
chr5 (40-104)||(8642017-8642081)
chr5 (40-104)||(21886129-21886193)
chr5 (40-104)||(27646818-27646882)
chr5 (40-104)||(29680090-29680154)
chr5 (41-104)||(15512996-15513059)
chr5 (40-104)||(34371711-34371775)
chr5 (40-104)||(34372167-34372231)
chr5 (40-104)||(42788629-42788693)
chr5 (55-104)||(3886599-3886648)
chr5 (40-104)||(189167-189231)
chr5 (40-104)||(3887040-3887104)
chr5 (40-104)||(8391305-8391369)
chr5 (40-104)||(17445438-17445502)
[»] scaffold0022 (3 HSPs)
scaffold0022 (40-116)||(163117-163193)
scaffold0022 (40-104)||(162661-162725)
scaffold0022 (40-116)||(163158-163234)
[»] chr4 (23 HSPs)
chr4 (40-104)||(1645726-1645790)
chr4 (40-104)||(23943219-23943283)
chr4 (46-104)||(27029376-27029434)
chr4 (40-104)||(7678599-7678663)
chr4 (40-104)||(12691976-12692040)
chr4 (40-104)||(23942766-23942830)
chr4 (40-104)||(50814802-50814866)
chr4 (40-104)||(53996092-53996156)
chr4 (42-104)||(15306070-15306132)
chr4 (40-89)||(29628645-29628694)
chr4 (40-104)||(3169305-3169369)
chr4 (40-104)||(44471302-44471366)
chr4 (40-104)||(49998735-49998799)
chr4 (40-104)||(50398515-50398579)
chr4 (41-104)||(27026602-27026664)
chr4 (42-104)||(14351894-14351956)
chr4 (40-74)||(23976195-23976229)
chr4 (40-86)||(35871744-35871790)
chr4 (40-102)||(50398970-50399032)
chr4 (41-90)||(21067844-21067893)
chr4 (40-104)||(4185814-4185878)
chr4 (40-104)||(24628954-24629018)
chr4 (40-104)||(51331258-51331322)
[»] chr3 (34 HSPs)
chr3 (40-104)||(25238667-25238731)
chr3 (40-104)||(50347845-50347909)
chr3 (55-104)||(25239075-25239124)
chr3 (40-104)||(2911194-2911258)
chr3 (40-104)||(4067343-4067407)
chr3 (40-104)||(8067379-8067443)
chr3 (40-104)||(13150537-13150601)
chr3 (40-104)||(25248210-25248274)
chr3 (40-104)||(28561845-28561909)
chr3 (40-104)||(30529786-30529850)
chr3 (40-104)||(31284259-31284323)
chr3 (40-104)||(32227204-32227268)
chr3 (40-104)||(39641036-39641100)
chr3 (40-104)||(39653263-39653327)
chr3 (40-104)||(11180017-11180081)
chr3 (40-104)||(13150082-13150146)
chr3 (40-104)||(14814048-14814112)
chr3 (40-104)||(14820253-14820317)
chr3 (40-104)||(16811480-16811544)
chr3 (40-104)||(20885100-20885164)
chr3 (40-104)||(25230231-25230295)
chr3 (40-104)||(25230688-25230752)
chr3 (40-104)||(25237818-25237882)
chr3 (40-104)||(25238275-25238339)
chr3 (40-104)||(32227599-32227663)
chr3 (40-100)||(37045138-37045198)
chr3 (41-104)||(16811024-16811087)
chr3 (41-104)||(41472399-41472462)
chr3 (42-104)||(27187315-27187377)
chr3 (40-68)||(15377419-15377447)
chr3 (1-41)||(25230748-25230788)
chr3 (1-41)||(25238335-25238375)
chr3 (40-104)||(25802531-25802595)
chr3 (40-104)||(32386717-32386781)
[»] chr8 (29 HSPs)
chr8 (42-104)||(31283636-31283698)
chr8 (40-104)||(2044157-2044221)
chr8 (40-104)||(22548978-22549042)
chr8 (40-104)||(6464893-6464957)
chr8 (40-104)||(8080325-8080389)
chr8 (40-104)||(12827237-12827301)
chr8 (40-104)||(22026478-22026542)
chr8 (40-104)||(22548532-22548596)
chr8 (40-104)||(25144871-25144935)
chr8 (40-104)||(28453437-28453501)
chr8 (40-100)||(32292500-32292560)
chr8 (42-101)||(3745203-3745262)
chr8 (41-104)||(10844599-10844662)
chr8 (41-104)||(41913069-41913132)
chr8 (43-104)||(10844982-10845043)
chr8 (40-104)||(25147635-25147699)
chr8 (40-104)||(27925998-27926062)
chr8 (40-104)||(33852241-33852305)
chr8 (40-104)||(34308918-34308982)
chr8 (40-102)||(15818999-15819060)
chr8 (42-104)||(25148066-25148128)
chr8 (42-84)||(27819231-27819273)
chr8 (55-116)||(10729710-10729771)
chr8 (40-85)||(21316092-21316137)
chr8 (40-101)||(27022321-27022382)
chr8 (41-109)||(10729670-10729738)
chr8 (40-104)||(12100790-12100854)
chr8 (40-100)||(17103184-17103244)
chr8 (40-104)||(34308462-34308526)
[»] chr7 (25 HSPs)
chr7 (42-104)||(6747583-6747645)
chr7 (40-104)||(679915-679979)
chr7 (40-116)||(7646502-7646578)
chr7 (40-104)||(2465832-2465896)
chr7 (40-104)||(2941740-2941804)
chr7 (40-104)||(13125119-13125183)
chr7 (40-104)||(28495591-28495655)
chr7 (40-104)||(28495953-28496017)
chr7 (40-104)||(35474104-35474168)
chr7 (40-104)||(42515191-42515255)
chr7 (40-104)||(42515643-42515707)
chr7 (40-114)||(7646461-7646535)
chr7 (40-102)||(34405574-34405636)
chr7 (43-104)||(9125058-9125119)
chr7 (40-100)||(2466027-2466087)
chr7 (40-104)||(2611635-2611699)
chr7 (40-104)||(6719057-6719121)
chr7 (40-104)||(13122488-13122552)
chr7 (40-104)||(26421288-26421352)
chr7 (40-104)||(36422351-36422415)
chr7 (65-104)||(16192418-16192457)
chr7 (42-104)||(5406573-5406635)
chr7 (40-86)||(43776273-43776319)
chr7 (40-104)||(2189243-2189307)
chr7 (40-104)||(46425840-46425904)
[»] scaffold0018 (1 HSPs)
scaffold0018 (40-104)||(10399-10463)
[»] chr2 (22 HSPs)
chr2 (40-104)||(16379036-16379100)
chr2 (40-104)||(24818425-24818489)
chr2 (40-104)||(1912624-1912687)
chr2 (40-104)||(8256625-8256689)
chr2 (40-104)||(11388286-11388350)
chr2 (40-104)||(16379492-16379556)
chr2 (40-104)||(25434039-25434103)
chr2 (40-104)||(33174602-33174666)
chr2 (40-104)||(41754388-41754452)
chr2 (41-104)||(29804781-29804844)
chr2 (40-84)||(16542105-16542149)
chr2 (40-104)||(30963703-30963767)
chr2 (40-104)||(30966789-30966853)
chr2 (41-104)||(1707140-1707203)
chr2 (42-104)||(30961868-30961930)
chr2 (55-104)||(18098876-18098925)
chr2 (1-38)||(30963306-30963343)
chr2 (55-104)||(33175057-33175106)
chr2 (40-104)||(5399800-5399864)
chr2 (40-104)||(25337980-25338044)
chr2 (40-104)||(30966333-30966397)
chr2 (40-104)||(33771100-33771164)
[»] chr1 (29 HSPs)
chr1 (40-104)||(20060323-20060387)
chr1 (41-104)||(12883623-12883686)
chr1 (40-104)||(20054519-20054583)
chr1 (40-104)||(20054975-20055039)
chr1 (40-104)||(20055431-20055495)
chr1 (40-104)||(20055887-20055951)
chr1 (40-104)||(20056343-20056407)
chr1 (40-104)||(20057246-20057310)
chr1 (40-104)||(20057702-20057766)
chr1 (40-104)||(20845644-20845708)
chr1 (40-104)||(43057506-43057570)
chr1 (40-104)||(50002268-50002332)
chr1 (49-104)||(2328414-2328469)
chr1 (41-104)||(52250305-52250368)
chr1 (41-104)||(52250642-52250705)
chr1 (41-104)||(52250979-52251042)
chr1 (42-104)||(43057050-43057112)
chr1 (42-104)||(51372859-51372921)
chr1 (43-104)||(20054066-20054127)
chr1 (40-104)||(12728091-12728155)
chr1 (40-104)||(16451916-16451980)
chr1 (40-104)||(16461069-16461133)
chr1 (40-104)||(20056799-20056863)
chr1 (40-104)||(35759591-35759655)
chr1 (40-104)||(38341005-38341069)
chr1 (41-90)||(8278070-8278119)
chr1 (55-104)||(20061189-20061238)
chr1 (40-104)||(35760897-35760961)
chr1 (40-104)||(46693718-46693782)
[»] scaffold0499 (1 HSPs)
scaffold0499 (40-104)||(2034-2098)
[»] scaffold0277 (1 HSPs)
scaffold0277 (40-104)||(14685-14749)
[»] scaffold0243 (1 HSPs)
scaffold0243 (40-104)||(1319-1383)
[»] scaffold0047 (1 HSPs)
scaffold0047 (40-104)||(18118-18181)
[»] scaffold0020 (1 HSPs)
scaffold0020 (40-104)||(107446-107510)
[»] scaffold0389 (1 HSPs)
scaffold0389 (42-104)||(13518-13580)
[»] scaffold0557 (1 HSPs)
scaffold0557 (55-104)||(2204-2253)
[»] scaffold0024 (1 HSPs)
scaffold0024 (40-101)||(105822-105883)
[»] scaffold0168 (1 HSPs)
scaffold0168 (40-104)||(2841-2905)
[»] scaffold0002 (1 HSPs)
scaffold0002 (40-104)||(154856-154920)
[»] scaffold0333 (2 HSPs)
scaffold0333 (40-104)||(4660-4724)
scaffold0333 (40-104)||(5120-5184)
[»] scaffold0322 (1 HSPs)
scaffold0322 (40-104)||(19065-19129)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 2891276 - 2891518
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatcttctttttggtagcgcacaa---catgttacatcacc 136  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  2891276 ccaaatcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatcttctttttggtagcgcacaagaacatgttacatcacc 2891375  T
Q  137 ggttgaagtagaggtgcacacagaaacaaaagttgttccccctagccgcaacaacagattgagcaggttcaacaaacaactaaggctgaggcaaccattg 236  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2891376 ggttgtagt-gaggtgcacacagaaacaaaagttgttccccctagccgcaacaacagattgagcaggttcaacaaacaactaaggctgaggcaaccattg 2891474  T
Q  237 atattggaacaacgacacagtctaatgatgaggaaaataatgtg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2891475 atattggaacaacgacacagtctaatgatgaggaaaataatgtg 2891518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 11062448 - 11062384
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  11062448 ccaagtcaagcacgcttaactgtggagttcttatggaatgggctaccaaaaagaagatgcatctt 11062384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2890882 - 2890922
Alignment:
Q  1 atctttttgatataggtagtccctaacaattcttataaacc 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2890882 atctttttgatataggtagtccctaacaattcttataaacc 2890922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 2720546 - 2720596
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaa 90  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  2720546 ccaagtcaagcacacttaactgtggagttcttatggaatgagctaccaaaa 2720596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 9352225 - 9352161
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  9352225 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 9352161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 16520131 - 16520067
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  16520131 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 16520067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 17851081 - 17851017
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||| ||||||||||||| ||  ||||||||||||    
T  17851081 ccaagtcaagcacgcttaactgtggagttcttatagaatgggctaccagaaagaagatgcatctt 17851017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 17851537 - 17851473
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||| ||||||||| |||| ||||||||||||||||  ||||||||||||    
T  17851537 ccaagtcaagcacgcttaattgtggagttcttatagaatgggctaccaaaaagaagatgcatctt 17851473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 21312134 - 21312070
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||| ||||||| |||| || ||||| |||||||||||||||  ||||||||||||    
T  21312134 ccaagtcaagcacgtttaactatggatttcttatgaaatgggctaccaaaaagaagatgcatctt 21312070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 28780273 - 28780209
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  28780273 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaacaagatgcatctt 28780209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 13492950 - 13492888
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  13492950 aagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 13492888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 33774986 - 33775048
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatct 103  Q
    |||||||| |||| |||||||||||||| ||||||||||| ||| |||||  |||||||||||    
T  33774986 caagtcaaacacacttaactgtggagttcttatggaatggactatcaaaaagaagatgcatct 33775048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 2890823 - 2890867
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctac 85  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||    
T  2890823 caagtcaagcacgcttaactgtggagttcttatggaatgggctac 2890867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 7912473 - 7912409
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||| ||||||| ||||||| |||||||||| |||||| |||  || |||||||||    
T  7912473 ccaagtcaagcacgtttaactatggagttcttatggaatgagctaccgaaaagaaaatgcatctt 7912409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 13492495 - 13492431
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||  |||||| |||  ||||||||||||    
T  13492495 ccaagtcaagcacgcttaactgtggagttcttatggaattagctaccgaaaagaagatgcatctt 13492431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20126165 - 20126229
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||| |||||| || |||||||||| ||||||||||  ||||||||||||    
T  20126165 ccaagtcaagcacgcttaattgtggaattcttatggaatgtgctaccaaaaagaagatgcatctt 20126229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 20850484 - 20850420
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||| ||||| |||||||||| |||||| |||  ||||||||||||    
T  20850484 ccaagtcaagcacgcttaactgtagagttcttatggaatgagctaccgaaaagaagatgcatctt 20850420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 3652634 - 3652585
Alignment:
Q  55 ttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| ||||||||||  |||||||||  ||||||||||||    
T  3652634 ttaactgtggagttcttatggaatgaactaccaaaaagaagatgcatctt 3652585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 17205501 - 17205448
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaa 93  Q
    |||| |||||||  ||||||  ||||||| ||||||||||||||||||||||||    
T  17205501 ccaaatcaagcatgtttaacaatggagttcttatggaatgggctaccaaaacaa 17205448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21312074 - 21312037
Alignment:
Q  1 atctttttgatataggtagtccctaacaattcttataa 38  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  21312074 atcttgttgatataggtagtacctaacaattcttataa 21312037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 7912025 - 7911977
Alignment:
Q  56 taactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  7912025 taactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 7911977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 13191496 - 13191560
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||| |||| |||||||| | |||||| |||  ||||||||||||    
T  13191496 ccaagtcaagcacgcttaactgtgaagttcttatggaacgagctaccgaaaagaagatgcatctt 13191560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 17027514 - 17027578
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||||| |||  |||||| |||||    
T  17027514 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgaatctt 17027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 20735858 - 20735794
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||| ||| |||| |||||| |||||||||||| |||||| ||||| |||  ||||||||||||    
T  20735858 ccaagccaaccacacttaactatggagtttttatagaatggactaccgaaaagaagatgcatctt 20735794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 23986300 - 23986364
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| ||||||||| |||| ||||||  || |||||| |||  ||||||||||||    
T  23986300 ccaagtcaagcacacttaactgtgaagttcttatggtttgagctaccgaaaagaagatgcatctt 23986364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 10927386 - 10927450
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  10927386 ccaagtcaagcacgtttaactgtggagttcttatggaatgggctaccaaaaagaagatgcatctt 10927450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 10926929 - 10926993
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||||||||  ||||||||||||    
T  10926929 ccaagtcaagcacgtttaactgtggagttcttatggaatggactaccaaaaggaagatgcatctt 10926993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 39147102 - 39147038
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  39147102 ccaagtcaagcacgcttaactgtggagttcttatggaatgggctaccaaaaagaagatgcatctt 39147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 1822069 - 1822005
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||| ||||||||| |||||||||||||||||||||  ||||||||||||    
T  1822069 ccaagtcaagcacgcttaaatgtggagttcttatggaatgggctaccaaaaagaagatgcatctt 1822005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 20039460 - 20039521
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||||| ||| |||||||||    
T  20039460 aagtcaagcacacttaactgtagagttcttatggaatgggctaccaaaagaaa-atgcatctt 20039521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2193979 - 2193915
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  2193979 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 2193915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2474122 - 2474058
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  2474122 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 2474058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2474568 - 2474504
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  2474568 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 2474504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 8642017 - 8642081
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  8642017 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 8642081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 21886129 - 21886193
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| |||||| ||||||| |||||||||| |||||| |||  ||||||||||||    
T  21886129 ccaagtcaagcacacttaactttggagttcttatggaatgagctaccgaaaagaagatgcatctt 21886193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 27646818 - 27646882
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||| |||||||  |||||||||||||| ||||| |||||||||||||||  ||||||||||||    
T  27646818 ccaagacaagcacgcttaactgtggagttcttatgaaatgggctaccaaaaagaagatgcatctt 27646882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 29680090 - 29680154
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  |||||||||||||| ||||| |||||||||||||||  ||||||||||||    
T  29680090 ccaagtcaaacacgcttaactgtggagttcttatgtaatgggctaccaaaaagaagatgcatctt 29680154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 15512996 - 15513059
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||| ||||| ||||||||| |||||||||| | ||||||||  ||||||||||||    
T  15512996 caagtcaagcacgtttaattgtggagttcttatggaatgagataccaaaaagaagatgcatctt 15513059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 34371775 - 34371711
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||| ||| |||||||||| |||||| |||  ||||||||||||    
T  34371775 ccaagtcaagcacgcttaactgtggtgttcttatggaatgagctaccgaaaagaagatgcatctt 34371711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 34372231 - 34372167
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||| |||| |||||||||| |||||| |||  ||||||||||||    
T  34372231 ccaagtcaagcacgcttaactgtgaagttcttatggaatgagctaccgaaaagaagatgcatctt 34372167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 42788629 - 42788693
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| || ||||||| |||||| |||  ||||||||||||    
T  42788629 ccaagtcaagcacgcttaactgtggagttcttgtggaatgagctaccgaaaagaagatgcatctt 42788693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 3886599 - 3886648
Alignment:
Q  55 ttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  3886599 ttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 3886648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 189231 - 189167
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||   |||||||||||||| |||||||||| |||||| |||  ||||| ||||||    
T  189231 ccaagtcaagcatgcttaactgtggagttcttatggaatgagctaccgaaaagaagatacatctt 189167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 3887040 - 3887104
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||| |||| |||||||||| | |||| |||  ||||||||||||    
T  3887040 ccaagtcaagcacgcttaactgtgaagttcttatggaatgagttaccgaaaagaagatgcatctt 3887104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 8391305 - 8391369
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||| ||||||| |||||||||  |||||| |||  ||||||||||||    
T  8391305 ccaagtcaagcacgcttaactatggagttcttatggaattagctaccgaaaagaagatgcatctt 8391369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 17445438 - 17445502
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||||| || |||||||||| |||||| | |  ||||||||||||    
T  17445438 ccaagtcaagcacgcttaactgtggatttcttatggaatgagctaccgataagaagatgcatctt 17445502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 163117 - 163193
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatcttctttttggtagc 116  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||||||| ||||||    
T  163117 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaacaagatgcatcttcttttcggtagc 163193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 162661 - 162725
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||| |||||| |||||||||| |||||| |||  ||||||||||||    
T  162661 ccaagtcaagcacgcttaactgcggagttcttatggaatgagctaccgaaaagaagatgcatctt 162725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 163234 - 163158
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatcttctttttggtagc 116  Q
    |||||||||||||  ||||||||||| || |||  ||||| |||||| |||  |||||||||||| |||| ||||||    
T  163234 ccaagtcaagcacgcttaactgtggaattcttaaagaatgagctaccgaaaagaagatgcatcttgttttcggtagc 163158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 1645726 - 1645790
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  1645726 ccaagtcaagcacgcttaactgtggagttcttatggaatgggctaccaaaaagaagatgcatctt 1645790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 23943219 - 23943283
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  23943219 ccaagtcaagcacgcttaactgtggagttcttatggaatgtgctaccaaaaagaagatgcatctt 23943283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 27029434 - 27029376
Alignment:
Q  46 caagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||| |||||||||||||| ||||||||||||||||| |||  ||||||||||||    
T  27029434 caagcacacttaactgtggagttcttatggaatgggctaccgaaaagaagatgcatctt 27029376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 7678599 - 7678663
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| |||||||||||||| |||||||||  |||||| |||  ||||||||||||    
T  7678599 ccaagtcaagcacacttaactgtggagttcttatggaataagctaccgaaaagaagatgcatctt 7678663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 12691976 - 12692040
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  12691976 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 12692040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 23942766 - 23942830
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||| ||||  ||||||||||||    
T  23942766 ccaagtcaagcacgcttaactgtggagttcttatggaatgtgctacaaaaaagaagatgcatctt 23942830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 50814802 - 50814866
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  50814802 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 50814866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 53996092 - 53996156
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| |||||||||||||| |||||||||| | ||||||||  |||||| |||||    
T  53996092 ccaagtcaagcacacttaactgtggagttcttatggaatgagataccaaaaagaagatgaatctt 53996156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 15306070 - 15306132
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  15306070 aagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 15306132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 29628645 - 29628694
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaa 89  Q
    ||||||||| |||  |||||||||||||| ||||||||||||||||||||    
T  29628645 ccaagtcaaacacgcttaactgtggagttcttatggaatgggctaccaaa 29628694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 3169369 - 3169305
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||| ||||||||| ||||||| |||| ||||||||  ||||||||||||    
T  3169369 ccaagtcaagcacgcttaagtgtggagttcttatggattgggttaccaaaaagaagatgcatctt 3169305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 44471302 - 44471366
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||| ||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  44471302 ccaaatcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 44471366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 49998799 - 49998735
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  49998799 ccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 49998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 50398515 - 50398579
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||| ||||||| |||||||||| |||||| |||  ||||||||||||    
T  50398515 ccaagtcaagcacgcttaactatggagttcttatggaatgagctaccgaaaagaagatgcatctt 50398579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 27026664 - 27026602
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||  ||||||  | |||| ||||||||||||||||||||| |||||||||||||    
T  27026664 caagtcaagcacgcttaactacgtagttcttatggaatgggctaccaaaa-aaagatgcatctt 27026602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 14351956 - 14351894
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||| |||  |||||||||||||| ||||||||| || ||||||||  ||||||||||||    
T  14351956 aagtcaaacacgcttaactgtggagttcttatggaataggataccaaaaagaagatgcatctt 14351894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 23976195 - 23976229
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatg 74  Q
    ||||||||||||| |||||||||||||||||||||    
T  23976195 ccaagtcaagcacgtttaactgtggagtttttatg 23976229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 35871790 - 35871744
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctacc 86  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||    
T  35871790 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctacc 35871744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 50398970 - 50399032
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatc 102  Q
    ||||||||| |||  |||||||||||||| |||||||||| |||||| |||  ||||||||||    
T  50398970 ccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatc 50399032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 21067893 - 21067844
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaa 90  Q
    ||||||||||||  ||||||||| |||| ||||||||||| |||||||||    
T  21067893 caagtcaagcacgcttaactgtgaagttcttatggaatggactaccaaaa 21067844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 4185878 - 4185814
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||| | |||||||| ||||| || | ||||| ||||||||||  ||||||||||||    
T  4185878 ccaagtcaagcatacttaactgtagagttcttgtagaatgagctaccaaaaagaagatgcatctt 4185814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 24628954 - 24629018
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||| | |||||  |||  ||||||||||||    
T  24628954 ccaagtcaagcacgcttaactgtggagttcttatggaacgagctactgaaaagaagatgcatctt 24629018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 51331258 - 51331322
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||||| |||  |||||| |||||    
T  51331258 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgtatctt 51331322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 25238667 - 25238731
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  25238667 ccaagtcaagcacgcttaactgtggagttcttatggaatgggctaccaaaaagaagatgcatctt 25238731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 50347909 - 50347845
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  50347909 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccaaaaagaagatgcatctt 50347845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 25239075 - 25239124
Alignment:
Q  55 ttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  25239075 ttaactgtggagttcttatggaatgggctaccaaaaagaagatgcatctt 25239124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2911258 - 2911194
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||||||  || |||||||||    
T  2911258 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccaaaaagaatatgcatctt 2911194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 4067343 - 4067407
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| ||||||||||  ||||||||||||    
T  4067343 ccaagtcaagcacgcttaactgtggagttcttatgtaatgagctaccaaaaagaagatgcatctt 4067407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 8067443 - 8067379
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||| ||||||| |||||||||| |||||| ||| |||||||||||||    
T  8067443 ccaagtcaagcacgcttaactatggagttcttatggaatgagctaccgaaaaaaagatgcatctt 8067379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 13150537 - 13150601
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  13150537 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 13150601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 25248274 - 25248210
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  | ||| |||||||| |||||||||||||||||||||  ||||||||||||    
T  25248274 ccaagtcaagcacgctgaaccgtggagttattatggaatgggctaccaaaaagaagatgcatctt 25248210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 28561909 - 28561845
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  28561909 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 28561845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 30529850 - 30529786
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||| || |||| |||||||||||||||||||||  ||||||||||||    
T  30529850 ccaagtcaagcacgcttaactatgaagttcttatggaatgggctaccaaaaagaagatgcatctt 30529786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 31284259 - 31284323
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  31284259 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 31284323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 32227204 - 32227268
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| ||||||||||  ||||||||||||    
T  32227204 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccaaaaagaagatgcatctt 32227268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 39641100 - 39641036
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  |||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  39641100 ccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccaaaaagaagatgcatctt 39641036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 39653327 - 39653263
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| |||||||||||||| | |||||||| |||||| |||  ||||||||||||    
T  39653327 ccaagtcaagcacacttaactgtggagttctcatggaatgagctaccgaaaagaagatgcatctt 39653263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 11180017 - 11180081
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||||| |||  ||||||||||||    
T  11180017 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatctt 11180081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 13150082 - 13150146
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||  |||  ||||||||||||    
T  13150082 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctactgaaaagaagatgcatctt 13150146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 14814112 - 14814048
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||| | |||||| |||  ||||||||||||    
T  14814112 ccaagtcaagcacgcttaactgtggagttcttatggaacgagctaccgaaaagaagatgcatctt 14814048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 14820317 - 14820253
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||| | |||||| |||  ||||||||||||    
T  14820317 ccaagtcaagcacgcttaactgtggagttcttatggaacgagctaccgaaaataagatgcatctt 14820253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 16811544 - 16811480
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||||| || |||||||||| |||||| |||  ||||||||||||    
T  16811544 ccaagtcaagcacgcttaactgtggaattcttatggaatgagctaccgaaaagaagatgcatctt 16811480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20885100 - 20885164
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||| ||||||||| |||||||||| ||||| ||||  ||||||||||||    
T  20885100 ccaagtcaagcacgcttaattgtggagttcttatggaatgtgctactaaaaagaagatgcatctt 20885164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 25230231 - 25230295
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||   ||||||||||||| |||| ||||||||||||||||  |||||| |||||    
T  25230231 ccaagtcaagcacgcataactgtggagttcttattgaatgggctaccaaaaagaagatgtatctt 25230295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 25230688 - 25230752
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||| ||| ||||| |||||||||||||||||||||  || |||||||||    
T  25230688 ccaagtcaagcacgcttaattgttgagttcttatggaatgggctaccaaaaagaaaatgcatctt 25230752  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 25237818 - 25237882
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||   ||||||||||||| |||| ||||||||||||||||  |||||| |||||    
T  25237818 ccaagtcaagcacgcataactgtggagttcttattgaatgggctaccaaaaagaagatgtatctt 25237882  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 25238275 - 25238339
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||| ||| ||||| |||||||||||||||||||||  || |||||||||    
T  25238275 ccaagtcaagcacgcttaattgttgagttcttatggaatgggctaccaaaaagaaaatgcatctt 25238339  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 32227663 - 32227599
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||||| |||  ||||||||||||    
T  32227663 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatctt 32227599  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 37045198 - 37045138
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgca 100  Q
    |||||||||||||  |||||||||||||| ||||||||| || ||||||||  ||||||||    
T  37045198 ccaagtcaagcacgcttaactgtggagttcttatggaatagggtaccaaaaagaagatgca 37045138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 16811087 - 16811024
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||| |||| |||| |||| |||||||||| |||||| |||  ||||||||||||    
T  16811087 caagtcaagcacacttaaatgtgaagttcttatggaatgagctaccgaaaagaagatgcatctt 16811024  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 41472462 - 41472399
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||| |||||| |||||||| ||||||||||  ||||| |||  ||||||||||||    
T  41472462 caagtcaagcacgtttaaccgtggagttcttatggaatgatctaccgaaaagaagatgcatctt 41472399  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 27187315 - 27187377
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||  |||||||||||||| ||||| |||| |||||| |||  ||||||||||||    
T  27187315 aagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatctt 27187377  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 15377447 - 15377419
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtt 68  Q
    |||||||||||||||||||||||||||||    
T  15377447 ccaagtcaagcacatttaactgtggagtt 15377419  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25230748 - 25230788
Alignment:
Q  1 atctttttgatataggtagtccctaacaattcttataaacc 41  Q
    ||||| |||||||||||||| || |||||||||||||||||    
T  25230748 atcttgttgatataggtagtaccaaacaattcttataaacc 25230788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25238335 - 25238375
Alignment:
Q  1 atctttttgatataggtagtccctaacaattcttataaacc 41  Q
    ||||| |||||||||||||| || |||||||||||||||||    
T  25238335 atcttgttgatataggtagtaccaaacaattcttataaacc 25238375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 25802531 - 25802595
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  ||||||||||| || ||||||||||||||| | |||  ||||||||||||    
T  25802531 ccaagtcaaacacgcttaactgtggatttcttatggaatgggctatcgaaaagaagatgcatctt 25802595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 32386717 - 32386781
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||  |||||  |||  ||||||||||||    
T  32386717 ccaagtcaagcacgcttaactgtggagttcttatggaattagctactgaaaagaagatgcatctt 32386781  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 31283636 - 31283698
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| |||  ||||||||||||    
T  31283636 aagtcaagcacacttaactgtggagttcttatggaatgggctaccgaaaagaagatgcatctt 31283698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2044221 - 2044157
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||  || |||||||||    
T  2044221 ccaagtcaagcacgcttaactgtggagttattatggaatgggctaccaaaaagaaaatgcatctt 2044157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 22548978 - 22549042
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||| |||  ||||||||||||    
T  22548978 ccaagtcaagcacgcttaactgtggagtttttatggaatgagctaccgaaaagaagatgcatctt 22549042  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 6464893 - 6464957
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||||||  || |||||||||    
T  6464893 ccaagtcaagcacgcttaactgtggagttgttatggaatgagctaccaaaaagaaaatgcatctt 6464957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 8080325 - 8080389
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||| |||| |||||||||||||||||||||  || |||||||||    
T  8080325 ccaagtcaagcacgcttaactgtgaagttcttatggaatgggctaccaaaaagaaaatgcatctt 8080389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 12827237 - 12827301
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  12827237 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 12827301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 22026542 - 22026478
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  22026542 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 22026478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 22548532 - 22548596
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  22548532 ccaagtcaagcacgcttaactgtggagttattatggaatgagctaccgaaaagaagatgcatctt 22548596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 25144935 - 25144871
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  25144935 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 25144871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 28453501 - 28453437
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||| ||||| |||||||||||||||||| ||  ||||||||||||    
T  28453501 ccaagtcaagcacgcttaactgtagagttcttatggaatgggctaccataaagaagatgcatctt 28453437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 32292560 - 32292500
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgca 100  Q
    |||||||||||||  |||||||||||||| ||||||||||||||| |||||  ||||||||    
T  32292560 ccaagtcaagcacgcttaactgtggagttcttatggaatgggctagcaaaaagaagatgca 32292500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 3745262 - 3745203
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcat 101  Q
    |||||||||||  || ||||||||||| |||||||||||||||||||||  |||||||||    
T  3745262 aagtcaagcacgcttgactgtggagttattatggaatgggctaccaaaaagaagatgcat 3745203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 10844599 - 10844662
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  10844599 caagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 10844662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 41913132 - 41913069
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||  ||||||| |||||| |||||||||||||||||||||  |||| |||||||    
T  41913132 caagtcaagcacgcttaactgcggagttcttatggaatgggctaccaaaaagaagacgcatctt 41913069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 10845043 - 10844982
Alignment:
Q  43 agtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  10845043 agtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 10844982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 25147699 - 25147635
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||| ||||||| |||||||||| |||||| |||  ||||||||||||    
T  25147699 ccaagtcaagcacgattaactatggagttcttatggaatgagctaccgaaaagaagatgcatctt 25147635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 27926062 - 27925998
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||||| |||  ||||||||||||    
T  27926062 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatctt 27925998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 33852241 - 33852305
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||| |||| |||| |||||||||||||||||||||  ||||| ||||||    
T  33852241 ccaagtcaagcacgcttaattgtgaagttcttatggaatgggctaccaaaaagaagatacatctt 33852305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 34308918 - 34308982
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||| |||||||  |||||||||||||| ||||||||| ||||||| |||  ||||||||||||    
T  34308918 ccaagccaagcacgcttaactgtggagttcttatggaataggctaccgaaaagaagatgcatctt 34308982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 15818999 - 15819060
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatc 102  Q
    |||||||||||| |||||||||| ||||| |||||||||| |||||| |||  ||||||||||    
T  15818999 ccaagtcaagcaaatttaactgt-gagttcttatggaatgtgctaccgaaaagaagatgcatc 15819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 25148128 - 25148066
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||  |||||||||||||| |||||||||| |||||| |||  || |||||||||    
T  25148128 aagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaatatgcatctt 25148066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 27819231 - 27819273
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggcta 84  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||    
T  27819231 aagtcaaacacacttaactgtggagtttttatggaatgagcta 27819273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 10729771 - 10729710
Alignment:
Q  55 ttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatcttctttttggtagc 116  Q
    |||| ||||||||| ||||||||||||  ||  |||  ||||||||||||||||||||||||    
T  10729771 ttaattgtggagttcttatggaatgggtaacagaaaacaagatgcatcttctttttggtagc 10729710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 21316092 - 21316137
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctac 85  Q
    |||||||||||||| |||||||||||||| ||||| |||| |||||    
T  21316092 ccaagtcaagcacacttaactgtggagttcttatgaaatgagctac 21316137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 27022321 - 27022382
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcat 101  Q
    |||||||||||||  |||||||||||||| |||||||||| ||| || |||  |||||||||    
T  27022321 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctgccgaaaataagatgcat 27022382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 10729670 - 10729738
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatcttctttt 109  Q
    |||| |||||||  |||| ||||||||  ||||||||| |||||||||||  |||||||||||| ||||    
T  10729670 caagccaagcacccttaattgtggagtccttatggaataggctaccaaaaagaagatgcatcttgtttt 10729738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 12100854 - 12100790
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||| |||| ||||| |||| |||||| |||  ||||||||||||    
T  12100854 ccaagtcaagcacgcttaactgtgaagttcttatgaaatgagctaccgaaaagaagatgcatctt 12100790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 17103244 - 17103184
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgca 100  Q
    |||||||||||||  ||||| |||||||| |||||||||| |||||| |||  ||||||||    
T  17103244 ccaagtcaagcacgcttaaccgtggagttcttatggaatgagctaccgaaaagaagatgca 17103184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 34308462 - 34308526
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||| |||||||  |||| ||||||||| ||||||||| ||||||| |||  ||||||||||||    
T  34308462 ccaagccaagcacgcttaagtgtggagttcttatggaataggctaccgaaaagaagatgcatctt 34308526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 6747583 - 6747645
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||  |||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  6747583 aagtcaagcacgcttaactgtggagtttttatggaataggctaccaaaaagaagatgcatctt 6747645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 679979 - 679915
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||  || |||||||||    
T  679979 ccaagtcaagcacgcttaactgtggagttcttatggaatgggctaccaaaaagaatatgcatctt 679915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 7646578 - 7646502
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatcttctttttggtagc 116  Q
    |||||||||||||  |||||||||||||| |||||||||| | |||| |||  ||||||||||||||||| ||||||    
T  7646578 ccaagtcaagcacgcttaactgtggagttcttatggaatgagttaccgaaaacaagatgcatcttcttttcggtagc 7646502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2465896 - 2465832
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  2465896 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 2465832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 2941740 - 2941804
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  2941740 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 2941804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 13125119 - 13125183
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  13125119 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 13125183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 28495591 - 28495655
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  28495591 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctacctaaaagaagatgcatctt 28495655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 28496017 - 28495953
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  28496017 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 28495953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 35474104 - 35474168
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  |||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  35474104 ccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccaaaaagaagatgcatctt 35474168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 42515255 - 42515191
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||||||  || |||||||||    
T  42515255 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccaaaaagaaaatgcatctt 42515191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 42515707 - 42515643
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  42515707 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 42515643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 7646461 - 7646535
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatcttctttttggta 114  Q
    |||||||||||||  ||||||||| |||| |||||||||| |||||| |||  |||||||||||| |||| ||||    
T  7646461 ccaagtcaagcacgcttaactgtgaagttcttatggaatgagctaccgaaaagaagatgcatcttgttttcggta 7646535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 34405574 - 34405636
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatc 102  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||    
T  34405574 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatc 34405636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 9125119 - 9125058
Alignment:
Q  43 agtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  9125119 agtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 9125058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 2466087 - 2466027
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgca 100  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||    
T  2466087 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgca 2466027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 2611635 - 2611699
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||| ||||||  |||||| ||||||| |||| ||||||||||||||||  ||||||||||||    
T  2611635 ccaagtaaagcacgcttaactatggagttcttatagaatgggctaccaaaaagaagatgcatctt 2611699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 6719057 - 6719121
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||| ||||||| |||||||||| |||||| |||  ||||||||||||    
T  6719057 ccaagtcaagcacgcttaactctggagttcttatggaatgagctaccgaaaagaagatgcatctt 6719121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 13122488 - 13122552
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||| ||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  13122488 ccaaatcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 13122552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 26421288 - 26421352
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||| |||| ||| ||||||||||||||| ||||||||||| ||||| ||| ||| |||||||||    
T  26421288 ccaattcaaacacgtttaactgtggagttcttatggaatggactaccgaaaaaaatatgcatctt 26421352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 36422415 - 36422351
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||||| |||  ||||||||||||    
T  36422415 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatctt 36422351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 16192457 - 16192418
Alignment:
Q  65 agtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  16192457 agttcttatggaatgggctaccaaaacgaagatgcatctt 16192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 5406573 - 5406635
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||  |||||||||||||| ||||||  ||||| |||||||  ||||||||||||    
T  5406573 aagtcaagcacgcttaactgtggagttcttatggtttgggcaaccaaaaataagatgcatctt 5406635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 43776273 - 43776319
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctacc 86  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||    
T  43776273 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctacc 43776319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2189307 - 2189243
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||| | |||  ||||||||||||    
T  2189307 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctatcgaaaagaagatgcatctt 2189243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 46425904 - 46425840
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||  | |||| |||  ||||||||||||    
T  46425904 ccaagtcaagcacgcttaactgtggagttcttatggaataagataccgaaaagaagatgcatctt 46425840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 10463 - 10399
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| ||| |||||||||||||    
T  10463 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaaaaagatgcatctt 10399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 16379100 - 16379036
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  16379100 ccaagtcaagcacgcttaactgtggagttcttatggaatgtgctaccaaaaagaagatgcatctt 16379036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 24818489 - 24818425
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| ||| |||||||||||||    
T  24818489 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaaaaagatgcatctt 24818425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 1912687 - 1912624
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  |||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  1912687 ccaagtcaatcacgcttaactgtggagttcttatggaatgggctaccaaaa-gaagatgcatctt 1912624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 8256689 - 8256625
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  8256689 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 8256625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 11388350 - 11388286
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  11388350 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 11388286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 16379556 - 16379492
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  |||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  16379556 ccaagtcaaacacgcttaactgtggagttcttatggaatgtgctaccaaaaagaagatgcatctt 16379492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 25434039 - 25434103
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||| ||   |||||||||||    
T  25434039 ccaagtcaagcacgcttaactgtggagttcttatggaatgggctaccagaaaggagatgcatctt 25434103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 33174666 - 33174602
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||| |||||| ||||||||||||||||| |||  ||||||||||||    
T  33174666 ccaagtcaagcacgcttaactgcggagttcttatggaatgggctaccgaaaagaagatgcatctt 33174602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 41754452 - 41754388
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  41754452 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 41754388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 29804844 - 29804781
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  29804844 caagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 29804781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 16542149 - 16542105
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggcta 84  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||||    
T  16542149 ccaagtcaaacacatttaactgtagagtttttatggaatgagcta 16542105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 30963703 - 30963767
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||||  |||||||||| ||  ||||||||||||    
T  30963703 ccaagtcaagcacgcttaactgtggagttattatggtttgggctaccagaaagaagatgcatctt 30963767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 30966853 - 30966789
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||| ||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  30966853 ccaagttaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 30966789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 1707203 - 1707140
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||| |||  |||||||||||||| |||||  ||||||||||||||  ||||||||||||    
T  1707203 caagtcaaacactcttaactgtggagttcttatgagatgggctaccaaaaagaagatgcatctt 1707140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 30961868 - 30961930
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||| ||||||||||||||| ||||||  | ||||||| ||| ||| |||||||||    
T  30961868 aagtcaagcacgtttaactgtggagttcttatggtttcggctaccgaaaaaaatatgcatctt 30961930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 18098876 - 18098925
Alignment:
Q  55 ttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||| ||||||| |||||||||| ||||||||||  ||||||||||||    
T  18098876 ttaactatggagttcttatggaatgagctaccaaaaagaagatgcatctt 18098925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30963306 - 30963343
Alignment:
Q  1 atctttttgatataggtagtccctaacaattcttataa 38  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  30963306 atcttgttgatataggtagtacctaacaattcttataa 30963343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 33175106 - 33175057
Alignment:
Q  55 ttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| ||||| |||| ||||||||||  ||||||||||||    
T  33175106 ttaactgtggagttcttatgaaatgagctaccaaaaagaagatgcatctt 33175057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 5399800 - 5399864
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||| || |||| |||||||||| |||||| |||  ||||||||||||    
T  5399800 ccaagtcaagcacgcttaactatgaagttcttatggaatgagctaccgaaaagaagatgcatctt 5399864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 25337980 - 25338044
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||| | |||  ||||||||||||    
T  25337980 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctatcgaaaagaagatgcatctt 25338044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 30966397 - 30966333
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||| ||||||| |||||||||| | |||| |||  ||||||||||||    
T  30966397 ccaagtcaagcacgcttaactatggagttcttatggaatgagataccgaaaagaagatgcatctt 30966333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 33771164 - 33771100
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||   |||||||||||||| ||||| |||| |||||| |||  ||||||||||||    
T  33771164 ccaagtcaagcatgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatctt 33771100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20060323 - 20060387
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20060323 ccaagtcaagcacacttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20060387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 12883686 - 12883623
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||| |||| ||||||||||||||||||||||||| ||||||||||  || |||||||||    
T  12883686 caagtcaaacacacttaactgtggagtttttatggaatgagctaccaaaaagaaaatgcatctt 12883623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20054519 - 20054583
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20054519 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20054583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20054975 - 20055039
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20054975 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20055039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20055431 - 20055495
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20055431 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20055495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20055887 - 20055951
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20055887 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20055951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20056343 - 20056407
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20056343 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20056407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20057246 - 20057310
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20057246 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20057310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20057702 - 20057766
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20057702 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20057766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20845644 - 20845708
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20845644 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20845708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 43057506 - 43057570
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  |||||||||||||| ||||||||||||||||| |||  ||||||||||||    
T  43057506 ccaagtcaatcacgcttaactgtggagttcttatggaatgggctaccgaaaagaagatgcatctt 43057570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 50002268 - 50002332
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  50002268 ccaagtcaagcacactcaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 50002332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 2328469 - 2328414
Alignment:
Q  49 gcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||| ||||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  2328469 gcacttttaactgtggagttcttatggaatgtgctaccaaaaagaagatgcatctt 2328414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 52250368 - 52250305
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  52250368 caagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 52250305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 52250705 - 52250642
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  52250705 caagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 52250642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 52251042 - 52250979
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  52251042 caagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 52250979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 43057050 - 43057112
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||| |||  |||||||||||||| ||||||||||||||||| |||  ||||||||||||    
T  43057050 aagtcaatcacgcttaactgtggagttcttatggaatgggctaccgaaaagaagatgcatctt 43057112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 51372859 - 51372921
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  51372859 aagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaataagatgcatctt 51372921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 20054066 - 20054127
Alignment:
Q  43 agtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20054066 agtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20054127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 12728155 - 12728091
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||   |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  12728155 ccaagtcaagcatgcttaactgtggagttcttatggaatgtgctaccgaaaagaagatgcatctt 12728091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 16451916 - 16451980
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||||||||  ||||| |||  ||||||||||||    
T  16451916 ccaagtcaagcacgcttaactgtggagttcttatggaatgaactaccgaaaagaagatgcatctt 16451980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 16461069 - 16461133
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||||||||  ||||| |||  ||||||||||||    
T  16461069 ccaagtcaagcacgcttaactgtggagttcttatggaatgaactaccgaaaagaagatgcatctt 16461133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 20056799 - 20056863
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||| |||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20056799 ccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20056863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 35759591 - 35759655
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    ||||||||||||| ||||||| || |||| |||||||||| |||||| |||  ||||||||||||    
T  35759591 ccaagtcaagcacgtttaactatgaagttcttatggaatgagctaccgaaaagaagatgcatctt 35759655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 38341069 - 38341005
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||||| |||| |||||||||| |||||| |||  ||||||||||||    
T  38341069 ccaagtcaagcacgcttaactgtgaagttcttatggaatgagctaccgaaatgaagatgcatctt 38341005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 8278119 - 8278070
Alignment:
Q  41 caagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaa 90  Q
    ||||||||||||  ||||||||||||| |||||| ||||| |||||||||    
T  8278119 caagtcaagcacgcttaactgtggagtctttatgaaatggactaccaaaa 8278070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 20061189 - 20061238
Alignment:
Q  55 ttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  20061189 ttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 20061238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 35760897 - 35760961
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  ||||||  |||||| | |||||||| ||||||||||  ||||||||||||    
T  35760897 ccaagtcaagcacgcttaactacggagttctcatggaatgagctaccaaaaagaagatgcatctt 35760961  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 46693718 - 46693782
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| | |||| |||  ||||||||||||    
T  46693718 ccaagtcaagcacgcttaactgtggagttattatgaaatgagataccgaaaagaagatgcatctt 46693782  T

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Target: scaffold0499 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 2034 - 2098
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  2034 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 2098  T

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Target: scaffold0277 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 14685 - 14749
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  14685 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaacaagatgcatctt 14749  T

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Target: scaffold0243 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 1383 - 1319
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  1383 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 1319  T

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Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 18118 - 18181
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||  |||||||||| |||||||||||||    
T  18118 ccaagtcaagcacgcttaactgtggagttcttatggaattagctaccaaaa-aaagatgcatctt 18181  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 107446 - 107510
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  107446 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 107510  T

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Target: scaffold0389 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 13518 - 13580
Alignment:
Q  42 aagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||  |||||||||||||| |||||||||| |||||| |||  ||||||||||||    
T  13518 aagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatctt 13580  T

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Target: scaffold0557 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 2253 - 2204
Alignment:
Q  55 ttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||| ||| |||||||||||||||||  ||||||||||||    
T  2253 ttaactgtggagttcttaaggaatgggctaccaaaaagaagatgcatctt 2204  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 105883 - 105822
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcat 101  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  |||||||||    
T  105883 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcat 105822  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2905 - 2841
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||| |||  || |||||||||    
T  2905 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaatatgcatctt 2841  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 154920 - 154856
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||  |||  ||||||||||||    
T  154920 ccaagtcaagcacgcttaactgtggagttcttatggaatgagctactgaaaagaagatgcatctt 154856  T

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Target: scaffold0333 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 4724 - 4660
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||| ||||||| |||||||||||||| ||||  |||| |||||| |||  ||||||||||||    
T  4724 ccaagttaagcacacttaactgtggagttcttataaaatgagctaccgaaaagaagatgcatctt 4660  T

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Target: scaffold0333; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 5184 - 5120
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||| ||||||  |||||||||||||| ||||| |||| |||||| |||  ||||||||||||    
T  5184 ccaagttaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatctt 5120  T

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Target: scaffold0322 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 19129 - 19065
Alignment:
Q  40 ccaagtcaagcacatttaactgtggagtttttatggaatgggctaccaaaacaaagatgcatctt 104  Q
    |||||||||||||  |||||||||||||| ||||| |||| |||||| |||  |||||| |||||    
T  19129 ccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgaatctt 19065  T

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