View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7712_low_33 (Length: 289)
Name: NF7712_low_33
Description: NF7712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7712_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 274
Target Start/End: Complemental strand, 7095470 - 7095200
Alignment:
| Q |
7 |
aaaaggaaagtatagagtaaatatgtatcttctaggttcatgtttgaagtcatgatgagtttgacgaaattacgatgacacaatattttgttgtaagttt |
106 |
Q |
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| T |
7095470 |
aaaaggaaagtatagagtaaatatgtatcttctaggtatatgtttgaagtcatgatgagtttgacgaaattacggtgacacaatattttgttgtaaattt |
7095371 |
T |
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| Q |
107 |
taaagtgtaacggcacactgcgatgccaccaaaattattgtcgatccacatatgaacaaaatcatttctatattcctagagttaaatgagttttcaagat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095370 |
taaagtgtaacggcacactgcgatgccaccaaaattattgtcaatccacatatgaacaaaatcatttctatattcctagagttaaatgagttttcaagat |
7095271 |
T |
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| Q |
207 |
---aaaataataataattttgctcaattccctctaaatgaggttatttcctcttaattcatggaaataatt |
274 |
Q |
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| T |
7095270 |
aaaaaaataataataattttgctcaattccctctaaatgaggttatttcctcttaattcatggaaataatt |
7095200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 8800767 - 8801007
Alignment:
| Q |
7 |
aaaaggaaagtatagagtaaatatgtatcttctaggttcatgtttgaagtcatgatgagtttgacgaaattacgatgacacaatattttgttgtaagttt |
106 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||| |
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| T |
8800767 |
aaaaggaaagtatagagtgaatatgtatcttctaggtacatgtttgaagtcatgatgagtttgacgaaatcacactgacacaataatttgttgtaagttt |
8800866 |
T |
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| Q |
107 |
taaagtgtaacggcacactgcgatgccaccaaaattattgtcgatccacatatgaacaaaatcatttctatattcctagagttaaatgagttttcaagat |
206 |
Q |
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| T |
8800867 |
taaagtgtaacggcacactgtgatgccaccaaaattattgtcgatccacatatgaacaaaatcatttctatattcctagagttaaatgagttttcaagat |
8800966 |
T |
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| Q |
207 |
aaaataataataattttgctcaattccctctaaatgaggtt |
247 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
8800967 |
aaaaaaataataattttgctcaattccctctaaatgaggtt |
8801007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 8801029 - 8801071
Alignment:
| Q |
232 |
ccctctaaatgaggttatttcctcttaattcatggaaataatt |
274 |
Q |
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| T |
8801029 |
ccctctaaatgaggttatttcctcttaattcatggaaataatt |
8801071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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